Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_D09
(712 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 255 2e-68
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 255 2e-68
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 164 4e-41
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 118 5e-27
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 116 1e-26
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 116 1e-26
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 109 1e-24
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 109 1e-24
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 109 1e-24
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 109 2e-24
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 108 4e-24
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 97 1e-20
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 93 1e-19
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 90 2e-18
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 89 3e-18
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 89 3e-18
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 88 5e-18
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 88 6e-18
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 84 1e-16
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 81 7e-16
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 81 9e-16
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 79 2e-15
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 79 4e-15
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 77 2e-14
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 77 2e-14
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 77 2e-14
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 77 2e-14
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 77 2e-14
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 76 3e-14
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 75 6e-14
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 75 6e-14
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 73 1e-13
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 73 2e-13
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 73 2e-13
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 72 3e-13
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 72 4e-13
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 71 1e-12
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 69 2e-12
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 69 4e-12
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 68 7e-12
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 67 1e-11
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 66 2e-11
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 65 4e-11
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 65 4e-11
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 65 4e-11
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 65 4e-11
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 65 5e-11
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 64 7e-11
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 64 7e-11
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 62 3e-10
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 62 3e-10
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 61 6e-10
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 60 1e-09
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 60 2e-09
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 57 1e-08
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 54 7e-08
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 54 1e-07
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 52 3e-07
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 52 5e-07
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 51 9e-07
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 34 0.081
At4g23310.1 68417.m03359 receptor-like protein kinase, putative ... 31 0.75
At1g51820.1 68414.m05841 leucine-rich repeat protein kinase, put... 29 2.3
At5g34960.1 68418.m04125 hypothetical protein includes At5g34960... 29 4.0
At5g44960.1 68418.m05514 F-box family protein contains F-box dom... 28 5.3
At1g35920.1 68414.m04461 hypothetical protein includes At5g34960... 28 5.3
At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein heli... 28 5.3
At3g44160.1 68416.m04734 chloroplast outer membrane protein-rela... 28 7.0
At3g42110.1 68416.m04323 hypothetical protein 27 9.3
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 255 bits (624), Expect = 2e-68
Identities = 119/173 (68%), Positives = 137/173 (79%)
Frame = +1
Query: 193 VKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMG 372
VK YV IHSSGFRDFLLKPE+LRAIVD GFEHPSEVQHECIPQA+LGMD++CQAKSGMG
Sbjct: 36 VKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMG 95
Query: 373 KTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPI 552
KTAVFVL+TLQQ+EPS V LV+CHTRELA+QI E+ RFS Y+ +VSVF+GG+ I
Sbjct: 96 KTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNI 155
Query: 553 QKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLXM 711
+ +++LK CPHIVVGTPGR+LA FILDECDKMLESL M
Sbjct: 156 KIHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDM 208
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 255 bits (624), Expect = 2e-68
Identities = 119/173 (68%), Positives = 137/173 (79%)
Frame = +1
Query: 193 VKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMG 372
VK YV IHSSGFRDFLLKPE+LRAIVD GFEHPSEVQHECIPQA+LGMD++CQAKSGMG
Sbjct: 36 VKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMG 95
Query: 373 KTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPI 552
KTAVFVL+TLQQ+EPS V LV+CHTRELA+QI E+ RFS Y+ +VSVF+GG+ I
Sbjct: 96 KTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNI 155
Query: 553 QKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLXM 711
+ +++LK CPHIVVGTPGR+LA FILDECDKMLESL M
Sbjct: 156 KIHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDM 208
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 164 bits (399), Expect = 4e-41
Identities = 77/125 (61%), Positives = 93/125 (74%)
Frame = +1
Query: 337 MDILCQAKSGMGKTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSG 516
MD++CQAKSGMGKTAVFVL+TLQQ+EPS V LV+CHTRELA+QI E+ RFS Y+
Sbjct: 1 MDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPD 60
Query: 517 VRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKML 696
+VSVF+GG+ I+ +++LK CPHIVVGTPGR+LA FILDECDKML
Sbjct: 61 TKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKML 120
Query: 697 ESLXM 711
ESL M
Sbjct: 121 ESLDM 125
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 118 bits (283), Expect = 5e-27
Identities = 61/157 (38%), Positives = 93/157 (59%), Gaps = 1/157 (0%)
Frame = +1
Query: 229 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 408
F D+ LK ++LR I + GFE PS +Q E IP A+ G DIL +AK+G GKT F + TL++
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEK 215
Query: 409 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 588
++P + + +++ TRELA Q S+ + SKY+ + V V GG ++ D +++ P
Sbjct: 216 IDPENNVIQAVILVPTRELALQTSQVCKELSKYLK-IEVMVTTGGTSLRDD--IMRLYQP 272
Query: 589 -HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKML 696
H++VGTPGRIL ++DE DK+L
Sbjct: 273 VHLLVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLL 309
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 116 bits (280), Expect = 1e-26
Identities = 59/159 (37%), Positives = 96/159 (60%), Gaps = 1/159 (0%)
Frame = +1
Query: 229 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 408
F D+ LK ++L+ I + GFE PS +Q E IP A+ G DIL +AK+G GKT F + L++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 409 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 588
++P+ + + +++ TRELA Q S+ + SKY++ ++V V GG ++ D +++ P
Sbjct: 186 IDPNNNVIQAMILVPTRELALQTSQVCKELSKYLN-IQVMVTTGGTSLRDD--IMRLHQP 242
Query: 589 -HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLES 702
H++VGTPGRIL ++DE DK+L +
Sbjct: 243 VHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSA 281
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 116 bits (280), Expect = 1e-26
Identities = 59/159 (37%), Positives = 96/159 (60%), Gaps = 1/159 (0%)
Frame = +1
Query: 229 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 408
F D+ LK ++L+ I + GFE PS +Q E IP A+ G DIL +AK+G GKT F + L++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 409 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 588
++P+ + + +++ TRELA Q S+ + SKY++ ++V V GG ++ D +++ P
Sbjct: 186 IDPNNNVIQAMILVPTRELALQTSQVCKELSKYLN-IQVMVTTGGTSLRDD--IMRLHQP 242
Query: 589 -HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLES 702
H++VGTPGRIL ++DE DK+L +
Sbjct: 243 VHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSA 281
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 109 bits (263), Expect = 1e-24
Identities = 58/157 (36%), Positives = 91/157 (57%), Gaps = 1/157 (0%)
Frame = +1
Query: 229 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 408
F D+ LK E+L I + GFE PS +Q E IP A+ G DIL +AK+G GKTA F + L++
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 409 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 588
++ + + +++ TRELA Q S+ + K++ ++V V GG ++ D +++ P
Sbjct: 193 IDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLK-IQVMVTTGGTSLKDD--IMRLYQP 249
Query: 589 -HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKML 696
H++VGTPGRIL ++DE DK+L
Sbjct: 250 VHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLL 286
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 109 bits (263), Expect = 1e-24
Identities = 58/157 (36%), Positives = 91/157 (57%), Gaps = 1/157 (0%)
Frame = +1
Query: 229 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 408
F D+ LK E+L I + GFE PS +Q E IP A+ G DIL +AK+G GKTA F + L++
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 409 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 588
++ + + +++ TRELA Q S+ + K++ ++V V GG ++ D +++ P
Sbjct: 193 IDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLK-IQVMVTTGGTSLKDD--IMRLYQP 249
Query: 589 -HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKML 696
H++VGTPGRIL ++DE DK+L
Sbjct: 250 VHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLL 286
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 109 bits (263), Expect = 1e-24
Identities = 66/165 (40%), Positives = 88/165 (53%)
Frame = +1
Query: 202 SYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTA 381
SY +H S F L+ +LR I GFE PS +Q I G+D++ QA+SG GKTA
Sbjct: 33 SYDDVHES-FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTA 91
Query: 382 VFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKD 561
F LQQL+ S LV+ TRELA QI K Y+ GV+V GG +++D
Sbjct: 92 TFCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVRED 150
Query: 562 EEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKML 696
+ +L+ A H+VVGTPGR+ F+LDE D+ML
Sbjct: 151 QRILQ-AGVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEML 194
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 109 bits (262), Expect = 2e-24
Identities = 61/151 (40%), Positives = 83/151 (54%)
Frame = +1
Query: 244 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSE 423
L+P++LR I GFE PS +Q I G+D++ QA+SG GKTA F LQQL+ S
Sbjct: 48 LQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDISL 107
Query: 424 SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVG 603
LV+ TRELA QI K Y+ GV+ GG +++D+ VL++ H+VVG
Sbjct: 108 VQCQALVLAPTRELAQQIEKVMRALGDYL-GVKAQACVGGTSVREDQRVLQSGV-HVVVG 165
Query: 604 TPGRILAXXXXXXXXXXXXXXFILDECDKML 696
TPGR+ F+LDE D+ML
Sbjct: 166 TPGRVFDLLRRQSLRADAIKMFVLDEADEML 196
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 108 bits (259), Expect = 4e-24
Identities = 65/165 (39%), Positives = 87/165 (52%)
Frame = +1
Query: 202 SYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTA 381
SY +H S F L+ +LR I GFE PS +Q I G+D++ QA+SG GKTA
Sbjct: 33 SYDEVHES-FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTA 91
Query: 382 VFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKD 561
F LQQL+ + LV+ TRELA QI K Y GV+V GG +++D
Sbjct: 92 TFCSGVLQQLDYALLQCQALVLAPTRELAQQIEKVMRALGDY-QGVKVHACVGGTSVRED 150
Query: 562 EEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKML 696
+ +L+ A H+VVGTPGR+ F+LDE D+ML
Sbjct: 151 QRILQ-AGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEML 194
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 96.7 bits (230), Expect = 1e-20
Identities = 57/169 (33%), Positives = 92/169 (54%), Gaps = 4/169 (2%)
Frame = +1
Query: 208 VSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVF 387
VS H+ F + L +LRA G++ P+ +Q CIP A+ G D+ A +G GKTA F
Sbjct: 162 VSFHADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAF 221
Query: 388 VLATLQQLEPSESHVY---VLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQK 558
L TL++L V+ VL++ TRELA QI + +++ + ++ + GG+ +++
Sbjct: 222 ALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQF-TDIKCGLIVGGLSVRE 280
Query: 559 DEEVLKTACPHIVVGTPGRIL-AXXXXXXXXXXXXXXFILDECDKMLES 702
E VL+ + P IVV TPGR++ ILDE D++L++
Sbjct: 281 QEVVLR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQT 328
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 93.5 bits (222), Expect = 1e-19
Identities = 50/158 (31%), Positives = 80/158 (50%)
Frame = +1
Query: 223 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 402
+ F D +K ++LR + + GFE PS +Q + + G D++ QA+SG GKT++ L+
Sbjct: 35 TSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVC 94
Query: 403 QQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTA 582
Q ++ S V L++ TRELA Q K + + + ++ GG + +D L+
Sbjct: 95 QVVDTSSREVQALILSPTRELATQTEKTIQAIGLH-ANIQAHACIGGNSVGEDIRKLEHG 153
Query: 583 CPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKML 696
H+V GTPGR+ ILDE D+ML
Sbjct: 154 V-HVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEML 190
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 89.8 bits (213), Expect = 2e-18
Identities = 59/176 (33%), Positives = 92/176 (52%), Gaps = 8/176 (4%)
Frame = +1
Query: 196 KGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGK 375
KGS + + + L E+L+A+ G++ PS +Q IP + D++ A++G GK
Sbjct: 304 KGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGK 363
Query: 376 TAVFV---LATLQQLEP-SESH----VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSV 531
TA FV LA + +L P SE + Y +VM TRELA QI +E +F+ Y+ G RV+
Sbjct: 364 TAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYL-GFRVTS 422
Query: 532 FFGGMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLE 699
GG I++ + C IV+ TPGR++ +LDE D+M++
Sbjct: 423 IVGGQSIEEQGLKITQGC-EIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMID 477
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 89.0 bits (211), Expect = 3e-18
Identities = 60/188 (31%), Positives = 90/188 (47%), Gaps = 11/188 (5%)
Frame = +1
Query: 169 TEVAPKKEVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDIL 348
T+ + VK S + + F F L P L+AI D GFE + VQ +P + G D+L
Sbjct: 364 TDKPTGEHVKTSDSYLSKTRFDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDVL 423
Query: 349 CQAKSGMGKTAVFVLATLQQL--EPSESH------VYVLVMCHTRELAFQISKEYERFSK 504
+AK+G GKT F+L ++ + P S + VLV+C TRELA Q + E K
Sbjct: 424 AKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQAAAEANTLLK 483
Query: 505 YMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRI---LAXXXXXXXXXXXXXXFIL 675
Y + V V GG + ++ ++T I+V TPGR+ + +L
Sbjct: 484 YHPSIGVQVVIGGTKLPTEQRRMQTNPCQILVATPGRLKDHIENTSGFATRLMGVKVLVL 543
Query: 676 DECDKMLE 699
DE D +L+
Sbjct: 544 DEADHLLD 551
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 89.0 bits (211), Expect = 3e-18
Identities = 62/189 (32%), Positives = 93/189 (49%), Gaps = 7/189 (3%)
Frame = +1
Query: 154 TADGSTEVAPKKEVKGSYVSIHS--SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQA 327
T +T+ + ++ S +H F D +I+ AI +E P+ +Q + +P
Sbjct: 203 TEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIV 262
Query: 328 VLGMDILCQAKSGMGKTAVFVLA----TLQQLEPSESHVYVLVMC-HTRELAFQISKEYE 492
+ G D++ AK+G GKTA FVL + Q E + V+C TRELA QI E +
Sbjct: 263 LSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAK 322
Query: 493 RFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFI 672
+FSK G+RVS +GGM + + LK C IVV TPGR++ +
Sbjct: 323 KFSK-AYGLRVSAVYGGMSKHEQFKELKAGC-EIVVATPGRLIDMLKMKALTMMRASYLV 380
Query: 673 LDECDKMLE 699
LDE D+M +
Sbjct: 381 LDEADRMFD 389
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 88.2 bits (209), Expect = 5e-18
Identities = 51/145 (35%), Positives = 78/145 (53%), Gaps = 3/145 (2%)
Frame = +1
Query: 274 DCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSESHVYVLVMCH 453
+ G P+ VQ C+P+ + G D+L A++G GKTA F L L +L V+ LV+
Sbjct: 75 ELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLAEDPYGVFALVVTP 134
Query: 454 TRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRI---LA 624
TRELAFQ++++++ ++ +R SV GGM + L + PHIV+ TPGRI L
Sbjct: 135 TRELAFQLAEQFKALGSCLN-LRCSVIVGGMDMLTQTMSL-VSRPHIVITTPGRIKVLLE 192
Query: 625 XXXXXXXXXXXXXXFILDECDKMLE 699
+LDE D++L+
Sbjct: 193 NNPDVPPVFSRTKFLVLDEADRVLD 217
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 87.8 bits (208), Expect = 6e-18
Identities = 49/156 (31%), Positives = 79/156 (50%)
Frame = +1
Query: 229 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 408
F D + ++LR + D G++ PSE+Q + + G D++ QA+SG GKT++ ++ Q
Sbjct: 24 FDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVCQI 83
Query: 409 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 588
+ S V VLV+ +RELA Q K + + + ++ GG I +D + L+
Sbjct: 84 VNISSRKVQVLVLSPSRELASQTEKTIQAIGAH-TNIQAHACIGGKSIGEDIKKLERGV- 141
Query: 589 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKML 696
H V GTPGR+ +LDE D+ML
Sbjct: 142 HAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEML 177
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 83.8 bits (198), Expect = 1e-16
Identities = 58/177 (32%), Positives = 87/177 (49%), Gaps = 11/177 (6%)
Frame = +1
Query: 202 SYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTA 381
SY+S + F F L P L+ I D GF+ + VQ +P + G DIL +AK+G GKT
Sbjct: 75 SYLS--KTRFDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTV 132
Query: 382 VFVLATLQQL--EPSESH------VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFF 537
F+L +++ + P S + VLV+C TRELA Q + E KY + V V
Sbjct: 133 AFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQVVI 192
Query: 538 GGMPIQKDEEVLKTACPHIVVGTPGRI---LAXXXXXXXXXXXXXXFILDECDKMLE 699
GG + ++ L+ + I+V TPGR+ + +LDE D +L+
Sbjct: 193 GGTKLPTEQRRLQKSPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLD 249
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 81.0 bits (191), Expect = 7e-16
Identities = 44/136 (32%), Positives = 78/136 (57%), Gaps = 2/136 (1%)
Frame = +1
Query: 220 SSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLAT 399
S GF L P + AI G++ P+ +Q + +P + G+D++ A++G GKTA F++
Sbjct: 27 SGGFESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPM 86
Query: 400 LQQLEP--SESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVL 573
L++L+ + V L++ TR+LA Q K + K+ + +RVS+ GG ++ E L
Sbjct: 87 LEKLKQHVPQGGVRALILSPTRDLAEQTLKFTKELGKF-TDLRVSLLVGGDSMEDQFEEL 145
Query: 574 KTACPHIVVGTPGRIL 621
T P +++ TPGR++
Sbjct: 146 -TKGPDVIIATPGRLM 160
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 80.6 bits (190), Expect = 9e-16
Identities = 55/187 (29%), Positives = 89/187 (47%), Gaps = 11/187 (5%)
Frame = +1
Query: 172 EVAPKKEVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILC 351
E + SY++ + F + L P L+AI D G+E + VQ +P + G D+L
Sbjct: 39 EADKTRNANDSYLT--KTRFDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLA 96
Query: 352 QAKSGMGKTAVFVLATLQQLEPS--------ESHVYVLVMCHTRELAFQISKEYERFSKY 507
+AK+G GKT F+L +++ + S + LV+C TRELA Q + E KY
Sbjct: 97 KAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKY 156
Query: 508 MSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRI---LAXXXXXXXXXXXXXXFILD 678
+ V V GG + +++ ++T I+V TPGR+ + +LD
Sbjct: 157 HPSIGVQVVIGGTRLGLEQKRMQTNPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLD 216
Query: 679 ECDKMLE 699
E D +L+
Sbjct: 217 EADHLLD 223
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 79.4 bits (187), Expect = 2e-15
Identities = 56/175 (32%), Positives = 84/175 (48%), Gaps = 4/175 (2%)
Frame = +1
Query: 187 KEVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSG 366
+ + Y++ SSG L PEILR ++ GF P+ +Q + P A+ DI+ AK+G
Sbjct: 428 ENIPAPYITFESSG-----LPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTG 482
Query: 367 MGKTAVFVLATLQQL----EPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVF 534
GKT +++ L S + VL++ TRELA QI E RF + S + +
Sbjct: 483 SGKTLGYLIPAFILLRHCRNDSRNGPTVLILAPTRELATQIQDEALRFGR-SSRISCTCL 541
Query: 535 FGGMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLE 699
+GG P + L+ IVV TPGR+ +LDE D+ML+
Sbjct: 542 YGGAPKGPQLKELERGA-DIVVATPGRLNDILEMKMIDFQQVSLLVLDEADRMLD 595
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 78.6 bits (185), Expect = 4e-15
Identities = 51/174 (29%), Positives = 84/174 (48%), Gaps = 5/174 (2%)
Frame = +1
Query: 193 VKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMG 372
V+G + FRD +L + GF P+ +Q + P A+ G D++ A++G G
Sbjct: 89 VEGKDIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSG 148
Query: 373 KTAVFVLATLQQL--EPSESH---VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFF 537
KT ++L + + +P +H VLV+ TRELA QI +E +F S ++ + +
Sbjct: 149 KTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGS-SSKIKTTCIY 207
Query: 538 GGMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLE 699
GG+P L+ IV+ TPGR++ +LDE D+ML+
Sbjct: 208 GGVPKGPQVRDLQKGV-EIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLD 260
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 76.6 bits (180), Expect = 2e-14
Identities = 58/180 (32%), Positives = 84/180 (46%), Gaps = 10/180 (5%)
Frame = +1
Query: 190 EVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGM 369
E G V + F D L + I C + P+ VQ IP + D++ A++G
Sbjct: 140 ETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGS 199
Query: 370 GKTAVFVLATL------QQLE-PSESHV---YVLVMCHTRELAFQISKEYERFSKYMSGV 519
GKTA F + Q +E P S + +++ TRELA QI E ++FS Y +GV
Sbjct: 200 GKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFS-YQTGV 258
Query: 520 RVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLE 699
+V V +GG PI + L+ C I+V TPGR+ LDE D+ML+
Sbjct: 259 KVVVAYGGTPIHQQLRELERGC-DILVATPGRLNDLLERARVSMQMIRFLALDEADRMLD 317
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 76.6 bits (180), Expect = 2e-14
Identities = 58/180 (32%), Positives = 84/180 (46%), Gaps = 10/180 (5%)
Frame = +1
Query: 190 EVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGM 369
E G V + F D L + I C + P+ VQ IP + D++ A++G
Sbjct: 140 ETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGS 199
Query: 370 GKTAVFVLATL------QQLE-PSESHV---YVLVMCHTRELAFQISKEYERFSKYMSGV 519
GKTA F + Q +E P S + +++ TRELA QI E ++FS Y +GV
Sbjct: 200 GKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFS-YQTGV 258
Query: 520 RVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLE 699
+V V +GG PI + L+ C I+V TPGR+ LDE D+ML+
Sbjct: 259 KVVVAYGGTPIHQQLRELERGC-DILVATPGRLNDLLERARVSMQMIRFLALDEADRMLD 317
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 76.6 bits (180), Expect = 2e-14
Identities = 54/173 (31%), Positives = 80/173 (46%), Gaps = 4/173 (2%)
Frame = +1
Query: 193 VKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMG 372
V G V F PE+LR ++ GF P+ +Q + P A+ G DI+ AK+G G
Sbjct: 148 VSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSG 207
Query: 373 KTAVFVLATLQQLE----PSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFG 540
KT +++ L+ S +LV+ TRELA QI +E +F + S + + +G
Sbjct: 208 KTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGR-SSRISCTCLYG 266
Query: 541 GMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLE 699
G P L+ IVV TPGR+ +LDE D+ML+
Sbjct: 267 GAPKGPQLRDLERGA-DIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLD 318
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 76.6 bits (180), Expect = 2e-14
Identities = 54/173 (31%), Positives = 80/173 (46%), Gaps = 4/173 (2%)
Frame = +1
Query: 193 VKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMG 372
V G V F PE+LR ++ GF P+ +Q + P A+ G DI+ AK+G G
Sbjct: 148 VSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSG 207
Query: 373 KTAVFVLATLQQLE----PSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFG 540
KT +++ L+ S +LV+ TRELA QI +E +F + S + + +G
Sbjct: 208 KTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGR-SSRISCTCLYG 266
Query: 541 GMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLE 699
G P L+ IVV TPGR+ +LDE D+ML+
Sbjct: 267 GAPKGPQLRDLERGA-DIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLD 318
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 76.6 bits (180), Expect = 2e-14
Identities = 54/173 (31%), Positives = 80/173 (46%), Gaps = 4/173 (2%)
Frame = +1
Query: 193 VKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMG 372
V G V F PE+LR ++ GF P+ +Q + P A+ G DI+ AK+G G
Sbjct: 148 VSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSG 207
Query: 373 KTAVFVLATLQQLE----PSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFG 540
KT +++ L+ S +LV+ TRELA QI +E +F + S + + +G
Sbjct: 208 KTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGR-SSRISCTCLYG 266
Query: 541 GMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLE 699
G P L+ IVV TPGR+ +LDE D+ML+
Sbjct: 267 GAPKGPQLRDLERGA-DIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLD 318
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 75.8 bits (178), Expect = 3e-14
Identities = 49/169 (28%), Positives = 88/169 (52%), Gaps = 13/169 (7%)
Frame = +1
Query: 229 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 408
F + ++ E+++A G+++PS++Q E +P A+ G D++ A++G GKT F + LQ
Sbjct: 11 FAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQA 70
Query: 409 L-------EPSESH-----VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPI 552
L EP + + V+ TRELA QI++++E +S +R +V GG+
Sbjct: 71 LLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADIS-LRCAVLVGGID- 128
Query: 553 QKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXF-ILDECDKML 696
+ + + PH++V TPGR+ + +LDE D++L
Sbjct: 129 RMQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLL 177
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 74.5 bits (175), Expect = 6e-14
Identities = 51/164 (31%), Positives = 78/164 (47%), Gaps = 4/164 (2%)
Frame = +1
Query: 220 SSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLAT 399
++GF +L+ P R + GF PS +Q + P A+ DI+ AK+G GKT +++
Sbjct: 228 AAGFNSYLVLPANGRMVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPG 287
Query: 400 LQQLE----PSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEE 567
L+ S +LV+ TRELA QI E +F K S + + +GG P +
Sbjct: 288 FMHLQRIHNDSRMGPTILVLSPTRELATQIQVEALKFGK-SSKISCACLYGGAPKGPQLK 346
Query: 568 VLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLE 699
++ IVV TPGR+ +LDE D+ML+
Sbjct: 347 EIERGV-DIVVATPGRLNDILEMKRISLHQVSYLVLDEADRMLD 389
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 74.5 bits (175), Expect = 6e-14
Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 13/172 (7%)
Frame = +1
Query: 220 SSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLAT 399
+ F + L +L ++ GF P++VQ +P + G D + Q+ +G GKT ++L
Sbjct: 109 AKSFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPI 168
Query: 400 LQQLEP-----SESH--------VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFG 540
L ++ P SH + +++ +REL QI +E E+ + V G
Sbjct: 169 LSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVG 228
Query: 541 GMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKML 696
G + EE LK P IVVGTPGRI +LDE D++L
Sbjct: 229 GANRMRQEEALKKNKPAIVVGTPGRIAEISKGGKLHTHGCRFLVLDEVDELL 280
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 73.3 bits (172), Expect = 1e-13
Identities = 54/184 (29%), Positives = 92/184 (50%), Gaps = 13/184 (7%)
Frame = +1
Query: 187 KEVKGSYVSIHSSG-FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKS 363
+E + + SI+S+ F + + P L+A+ G + VQ + + + G D L +AK+
Sbjct: 362 EEKQEPHDSIYSAKRFDESCISPLTLKALSASGIVKMTRVQDATLSECLDGKDALVKAKT 421
Query: 364 GMGKTAVFVLATLQQ-LEPSES----H----VYVLVMCHTRELAFQISKEYERFSKYMSG 516
G GK+ F+L ++ L+ S H ++VL++C TRELA QI+ E + K G
Sbjct: 422 GTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQIAAEGKALLKNHDG 481
Query: 517 VRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRIL---AXXXXXXXXXXXXXXFILDECD 687
+ V GG + D++ L++ I++ TPGR+L FI+DE D
Sbjct: 482 IGVQTLIGGTRFRLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEAD 541
Query: 688 KMLE 699
+L+
Sbjct: 542 LLLD 545
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 72.9 bits (171), Expect = 2e-13
Identities = 50/184 (27%), Positives = 91/184 (49%), Gaps = 13/184 (7%)
Frame = +1
Query: 187 KEVKGSYVSIHSSG-FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKS 363
+E + + SI+S+ F + + P L+A+ G + VQ + + + G D L +AK+
Sbjct: 315 EEKQEPHDSIYSAKRFDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKT 374
Query: 364 GMGKTAVFVLATLQQLEPSESH---------VYVLVMCHTRELAFQISKEYERFSKYMSG 516
G GK+ F+L ++ + + + ++ L++C TRELA QI+ E + K+ G
Sbjct: 375 GTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQIAAEGKALLKFHDG 434
Query: 517 VRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRIL---AXXXXXXXXXXXXXXFILDECD 687
+ V GG + D++ L++ I++ TPGR+L FI+DE D
Sbjct: 435 IGVQTLIGGTRFKLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEAD 494
Query: 688 KMLE 699
+L+
Sbjct: 495 LLLD 498
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 72.5 bits (170), Expect = 2e-13
Identities = 58/180 (32%), Positives = 83/180 (46%), Gaps = 10/180 (5%)
Frame = +1
Query: 190 EVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGM 369
E G V + F + L + I C + P+ VQ IP + G D++ A++G
Sbjct: 148 ETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGS 207
Query: 370 GKTAVFVLATLQQL-------EPSESH-VYVL--VMCHTRELAFQISKEYERFSKYMSGV 519
GKTA F + + P S VY L ++ TRELA QI E ++FS Y +GV
Sbjct: 208 GKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFS-YQTGV 266
Query: 520 RVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLE 699
+V V +GG PI + L+ I+V TPGR+ LDE D+ML+
Sbjct: 267 KVVVAYGGTPINQQLRELERGV-DILVATPGRLNDLLERARVSMQMIRFLALDEADRMLD 325
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 72.1 bits (169), Expect = 3e-13
Identities = 57/180 (31%), Positives = 81/180 (45%), Gaps = 10/180 (5%)
Frame = +1
Query: 190 EVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGM 369
E G V + F + L + I C + P+ VQ IP G D++ A++G
Sbjct: 135 ETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGS 194
Query: 370 GKTAVFVLATL------QQLEPSES--HVYVL--VMCHTRELAFQISKEYERFSKYMSGV 519
GKTA F + Q +E VY L ++ TRELA QI E +FS Y +GV
Sbjct: 195 GKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFS-YQTGV 253
Query: 520 RVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLE 699
+V V +GG P+ + L+ I+V TPGR+ LDE D+ML+
Sbjct: 254 KVVVAYGGTPVNQQIRELERGV-DILVATPGRLNDLLERGRVSLQMVRFLALDEADRMLD 312
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 71.7 bits (168), Expect = 4e-13
Identities = 59/206 (28%), Positives = 98/206 (47%), Gaps = 24/206 (11%)
Frame = +1
Query: 154 TADGSTEVAPKKEVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVL 333
+ DG V +++V+ + S + L P ++++I F+ P+++Q C A
Sbjct: 169 SCDGDDTV--EEQVEEEEIPPEFSAWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAY 226
Query: 334 -GMDILCQAKSGMGKTAVFVLATLQQL--------------------EPSESHVYVLVMC 450
G D++ A++G GKT F L LQ+L ++ ++ L++
Sbjct: 227 QGKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIIT 286
Query: 451 HTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGR---IL 621
TRELA Q+++ E +K +S V+V GGM +K E LK P IVV TPGR ++
Sbjct: 287 PTRELALQVTEHLENAAKNLS-VKVVPIVGGMFSEKQERRLKEK-PEIVVATPGRLWELM 344
Query: 622 AXXXXXXXXXXXXXXFILDECDKMLE 699
+ F+LDE D+M+E
Sbjct: 345 SAGEKHLVELHSLSFFVLDEADRMVE 370
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 70.5 bits (165), Expect = 1e-12
Identities = 55/183 (30%), Positives = 88/183 (48%), Gaps = 7/183 (3%)
Frame = +1
Query: 172 EVAPKKEVKG-SYVSIHSSG-FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDI 345
EV K+E K SI ++ F L ++I + GF +++Q + IP ++G D+
Sbjct: 135 EVEDKEEEKKLEETSIMTNKTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDV 194
Query: 346 LCQAKSGMGKTAVFVLATLQQLE----PSESHVYVLVMCHTRELAFQISKEYERFSKYMS 513
L A++G GKT F++ ++ L + VLV+C TRELA Q + KY S
Sbjct: 195 LGAARTGSGKTLAFLIPAVELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHS 254
Query: 514 GVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXF-ILDECDK 690
V GG + + E+L +++V TPGR+L F ++DE D+
Sbjct: 255 QT-VGKVIGGEKRKTEAEILAKGV-NLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADR 312
Query: 691 MLE 699
+LE
Sbjct: 313 ILE 315
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 69.3 bits (162), Expect = 2e-12
Identities = 47/159 (29%), Positives = 76/159 (47%), Gaps = 7/159 (4%)
Frame = +1
Query: 244 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSE 423
L +I+ A+ GFE + VQ E IP D++ A +G GKT F+L ++ + S
Sbjct: 23 LSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSN 82
Query: 424 SH------VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTAC 585
S+ V +++ TREL+ QI K E F + V + GG ++ D L+
Sbjct: 83 SYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEG 142
Query: 586 PHIVVGTPGRIL-AXXXXXXXXXXXXXXFILDECDKMLE 699
++++GTPGR+ ILDE D++L+
Sbjct: 143 ANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLD 181
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 68.5 bits (160), Expect = 4e-12
Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 7/166 (4%)
Frame = +1
Query: 220 SSGFRDFLLKPEILRAI-VDCGFEHPSEVQHECIPQAVLG--MDILCQAKSGMGKTAVFV 390
+S F D L PE+++ + V+ FE PS++Q +P + ++ QA +G GKT FV
Sbjct: 90 ASRFEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMTPPHKHLIAQAHNGSGKTTCFV 149
Query: 391 LATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMP-IQKDEE 567
L L +++P+ L +C TRELA Q + ++ K+ +G+ + +P +
Sbjct: 150 LGMLSRVDPTLREPQALCICPTRELANQNMEVLQKMGKF-TGITAEL---AVPDSTRGAP 205
Query: 568 VLKTACP---HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKML 696
P H+V+GTPG + + DE D ML
Sbjct: 206 AATRGAPVSAHVVIGTPGTLKKWMAFKRLGLNHLKILVFDEADHML 251
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 67.7 bits (158), Expect = 7e-12
Identities = 43/160 (26%), Positives = 77/160 (48%), Gaps = 8/160 (5%)
Frame = +1
Query: 244 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVL------ATLQ 405
L P++L + G++ P+ +Q + IP A+ G +L A +G GKTA F++ T
Sbjct: 117 LPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYH 176
Query: 406 QLEPSES--HVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 579
PS+ + +V+ TREL Q+ + + K + + ++ GG P+ ++
Sbjct: 177 SEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLP-FKTALVVGGDPMSGQLYRIQQ 235
Query: 580 ACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLE 699
+++GTPGR++ F+LDE D ML+
Sbjct: 236 GV-ELIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQ 274
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 66.9 bits (156), Expect = 1e-11
Identities = 52/160 (32%), Positives = 76/160 (47%), Gaps = 8/160 (5%)
Frame = +1
Query: 244 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE--- 414
L +IL + +E P +Q + +P + G D + AK+G GKT FVL L+ ++
Sbjct: 536 LTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQP 595
Query: 415 PSES--HVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 588
P E+ LVM TREL QI + +FSK + G+R +GG + + LK
Sbjct: 596 PVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPL-GIRCVPVYGGSGVAQQISELKRG-T 653
Query: 589 HIVVGTPGR---ILAXXXXXXXXXXXXXXFILDECDKMLE 699
IVV TPGR IL ++DE D+M +
Sbjct: 654 EIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFD 693
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 66.1 bits (154), Expect = 2e-11
Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 6/161 (3%)
Frame = +1
Query: 235 DFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE 414
D + PEI++A+ G E +Q + A+ G D++ +A++G GKT F + + ++
Sbjct: 120 DLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII 179
Query: 415 PSES------HVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLK 576
+ + LV+ TRELA Q+ KE+ + + + +GG PI + L
Sbjct: 180 KFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLDTI---CLYGGTPIGQQMRELN 236
Query: 577 TACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLE 699
+ VGTPGRI+ +LDE D+ML+
Sbjct: 237 YGI-DVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQ 276
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 65.3 bits (152), Expect = 4e-11
Identities = 48/149 (32%), Positives = 72/149 (48%), Gaps = 10/149 (6%)
Frame = +1
Query: 280 GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQL--EPSESHVY------ 435
G H +Q + A+ G DI+ +AK+G GKT F + +++L E + +
Sbjct: 121 GITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRL 180
Query: 436 --VLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTP 609
LV+ TRELA Q+ KE + + Y+S V V +GG+ + L T +VVGTP
Sbjct: 181 PKFLVLAPTRELAKQVEKEIKESAPYLSTVCV---YGGVSYTIQQSAL-TRGVDVVVGTP 236
Query: 610 GRILAXXXXXXXXXXXXXXFILDECDKML 696
GRI+ +LDE D+ML
Sbjct: 237 GRIIDLIEGRSLKLGEVEYLVLDEADQML 265
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 65.3 bits (152), Expect = 4e-11
Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 9/166 (5%)
Frame = +1
Query: 229 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 408
F++ L E++ A+ + E P+E+Q IP + ++ + +G GKT ++L +Q
Sbjct: 114 FQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQL 173
Query: 409 LEPSESHV---------YVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKD 561
+ E+++ +V+C TREL+ Q+ + + S + + R + GG I+
Sbjct: 174 MREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHH-ARFRSILVSGGSRIRPQ 232
Query: 562 EEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLE 699
E+ L A +VVGTPGRIL +LDE D M +
Sbjct: 233 EDSLNNAI-DMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFD 277
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 65.3 bits (152), Expect = 4e-11
Identities = 44/158 (27%), Positives = 76/158 (48%), Gaps = 6/158 (3%)
Frame = +1
Query: 244 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQL-EPS 420
+ PEI++A+ G E +Q + A+ G D++ +A++G GKT F + + ++ + +
Sbjct: 111 ISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYN 170
Query: 421 ESH-----VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTAC 585
H LV+ TRELA Q+ KE+ + + + +GG PI + L
Sbjct: 171 AKHGRGRNPLCLVLAPTRELARQVEKEFRESAPSLDTI---CLYGGTPIGQQMRQLDYGV 227
Query: 586 PHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLE 699
+ VGTPGR++ +LDE D+ML+
Sbjct: 228 -DVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQ 264
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 65.3 bits (152), Expect = 4e-11
Identities = 52/160 (32%), Positives = 76/160 (47%), Gaps = 8/160 (5%)
Frame = +1
Query: 244 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE--- 414
L +IL + +E P +Q + +P + G D + AK+G GKT FVL L+ ++
Sbjct: 403 LTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQP 462
Query: 415 PSES--HVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 588
P E+ LVM TREL QI + +FSK + + V V +GG + + LK
Sbjct: 463 PVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIICVPV-YGGSGVAQQISELKRG-T 520
Query: 589 HIVVGTPGR---ILAXXXXXXXXXXXXXXFILDECDKMLE 699
IVV TPGR IL ++DE D+M +
Sbjct: 521 EIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFD 560
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 64.9 bits (151), Expect = 5e-11
Identities = 55/183 (30%), Positives = 84/183 (45%), Gaps = 14/183 (7%)
Frame = +1
Query: 193 VKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMG 372
V G + F D +LR + D G HP+ +Q + +P + G D++ A +G G
Sbjct: 87 VNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSG 146
Query: 373 KTAVFVL----ATLQQ-----LEPSESHVYVLVMCHTRELAFQISKEYERF--SKYMSG- 516
KT VFVL LQ+ + E + LV+C +RELA Q E+F S G
Sbjct: 147 KTLVFVLPMIILALQEEIMMPIAAGEGPI-ALVICPSRELAKQTYDVVEQFVASLVEDGY 205
Query: 517 --VRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDK 690
+R + GG+ ++ +V+K HIVV TPGR+ LDE D+
Sbjct: 206 PRLRSLLCIGGVDMRSQLDVVKKGV-HIVVATPGRLKDILAKKKMSLDACRLLTLDEADR 264
Query: 691 MLE 699
+++
Sbjct: 265 LVD 267
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 64.5 bits (150), Expect = 7e-11
Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 5/156 (3%)
Frame = +1
Query: 250 PE-ILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSES 426
PE IL + + GF P+++Q E +P G D + A++G GKT ++L + P S
Sbjct: 84 PEHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQRS 143
Query: 427 HVYVLVMCHTRELAFQISKEYERFSKY----MSGVRVSVFFGGMPIQKDEEVLKTACPHI 594
V +++ TREL Q++K + + G V G +++ + LK P I
Sbjct: 144 SVQAVIVVPTRELGMQVTKVARMLAAKSEIDVKGCTVMALLDGGTLRRHKSWLKAEPPAI 203
Query: 595 VVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLES 702
+V T + ++DE D + S
Sbjct: 204 LVATVASLCHMLEKHIFRIDSVRVLVVDEVDFLFYS 239
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 64.5 bits (150), Expect = 7e-11
Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 1/149 (0%)
Frame = +1
Query: 256 ILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE-PSESHV 432
ILR + + GF+ P+ +Q + IP + G + A +G GKT F+ L +L+ PS +
Sbjct: 152 ILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPMLIKLKRPSTDGI 211
Query: 433 YVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPG 612
+++ RELA Q ++E + K + G + P+ K + K C +++ TP
Sbjct: 212 RAVILSPARELAAQTAREGK---KLIKGSNFHIRLMTKPLVKTADFSKLWC-DVLISTPM 267
Query: 613 RILAXXXXXXXXXXXXXXFILDECDKMLE 699
R+ +LDE DK+ E
Sbjct: 268 RLKRAIKAKKIDLSKVEYLVLDESDKLFE 296
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 62.5 bits (145), Expect = 3e-10
Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 7/159 (4%)
Frame = +1
Query: 244 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSE 423
L +I+ A+ FE + VQ IP D+ A +G GKT FV+ ++ L S
Sbjct: 23 LSGDIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRST 82
Query: 424 S------HVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTAC 585
S V +++ TREL+ QI + F ++ V + GG ++ D ++++
Sbjct: 83 SFPPKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEG 142
Query: 586 PHIVVGTPGRIL-AXXXXXXXXXXXXXXFILDECDKMLE 699
++++GTPGR+ ILDE D++LE
Sbjct: 143 CNVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLLE 181
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 62.5 bits (145), Expect = 3e-10
Identities = 43/150 (28%), Positives = 75/150 (50%), Gaps = 5/150 (3%)
Frame = +1
Query: 265 AIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPS----ESHV 432
AI + GF++ +++Q I + G D+L A++G GKT F++ ++ L +
Sbjct: 103 AIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGT 162
Query: 433 YVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPG 612
V+V+C TRELA Q E K+ S VS+ GG + + + + + ++V+ TPG
Sbjct: 163 GVIVICPTRELAIQTKNVAEELLKHHSQT-VSMVIGGNNRRSEAQRIASG-SNLVIATPG 220
Query: 613 RIL-AXXXXXXXXXXXXXXFILDECDKMLE 699
R+L ++DE D++LE
Sbjct: 221 RLLDHLQNTKAFIYKHLKCLVIDEADRILE 250
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 61.3 bits (142), Expect = 6e-10
Identities = 54/189 (28%), Positives = 91/189 (48%), Gaps = 11/189 (5%)
Frame = +1
Query: 169 TEVAPKKEVKGSYVSIHSSGFRDFLLKP---EILRAIVDCGFEHPSEVQHECIPQAVLGM 339
+++ ++ K V +G R F P + R + D + ++VQ IP A+ G
Sbjct: 50 SKIGKSEDGKNGTVFSRYAGVRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGR 109
Query: 340 DILCQAKSGMGKTAVFVLATLQQLE----PSESHVYVLVMCHTRELA---FQISKEYERF 498
DIL A++G GKT FV+ L++L E V +++ TRELA F + + +F
Sbjct: 110 DILGAARTGSGKTLAFVIPILEKLHRERWSPEDGVGCIIISPTRELAAQTFGVLNKVGKF 169
Query: 499 SKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILA-XXXXXXXXXXXXXXFIL 675
K+ +G+ + G+ ++K E V + +I+V PGR+L IL
Sbjct: 170 HKFSAGLLIG-GREGVDVEK-ERVHEM---NILVCAPGRLLQHMDETPNFECPQLQILIL 224
Query: 676 DECDKMLES 702
DE D++L+S
Sbjct: 225 DEADRVLDS 233
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 60.1 bits (139), Expect = 1e-09
Identities = 49/182 (26%), Positives = 83/182 (45%), Gaps = 13/182 (7%)
Frame = +1
Query: 193 VKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMG 372
V G + F+D +L + + G P+ +Q + +P + G D++ A +G G
Sbjct: 136 VNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSG 195
Query: 373 KTAVFVLATLQQLEPSESHVYV--------LVMCHTRELAFQISKEYERFSKYM--SG-- 516
KT VFVL + E + + L++C +RELA Q + E+F + +G
Sbjct: 196 KTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYP 255
Query: 517 -VRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKM 693
+R + GG+ ++ EV+K HIVV TPGR+ LDE D++
Sbjct: 256 PLRSLLCIGGIDMRSQLEVVKRGV-HIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRL 314
Query: 694 LE 699
++
Sbjct: 315 VD 316
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 59.7 bits (138), Expect = 2e-09
Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 7/147 (4%)
Frame = +1
Query: 280 GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE-----PSESH-VYVL 441
GFE P+ VQ + IP + G D+L A +G GKT ++ + L+ SH + L
Sbjct: 49 GFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFAL 108
Query: 442 VMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRIL 621
V+ TREL Q+ + E+ + GG K++ L+ I++ TPGR+L
Sbjct: 109 VIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEKKAKEKARLRKGI-SILIATPGRLL 167
Query: 622 AXXXXXXXXXXXXXXFIL-DECDKMLE 699
+++ DE D +LE
Sbjct: 168 DHLKNTASFVHKNLRWVIFDEADSILE 194
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 57.2 bits (132), Expect = 1e-08
Identities = 47/149 (31%), Positives = 69/149 (46%), Gaps = 10/149 (6%)
Frame = +1
Query: 280 GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQL--EPSES--------H 429
G E +Q + G D++ +A++G GKT FVL L+ L P++S
Sbjct: 115 GIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRS 174
Query: 430 VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTP 609
VLV+ TRELA Q++ +++ + + G+ +GG E LK IVVGTP
Sbjct: 175 PSVLVLLPTRELAKQVAADFDAYGGSL-GLSSCCLYGGDSYPVQEGKLKRGV-DIVVGTP 232
Query: 610 GRILAXXXXXXXXXXXXXXFILDECDKML 696
GRI +LDE D+ML
Sbjct: 233 GRIKDHIERQNLDFSYLQFRVLDEADEML 261
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 54.4 bits (125), Expect = 7e-08
Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 11/155 (7%)
Frame = +1
Query: 268 IVDC--GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVF-VLATLQQLEPSES---- 426
++DC FE PS +Q P + G D++ AK+G GKT F + A + L+ ++
Sbjct: 127 VLDCCKTFEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGG 186
Query: 427 ----HVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHI 594
+ LV+ TRELA QIS + R + G++ +GG +++ I
Sbjct: 187 SKKVNPTCLVLSPTRELAVQIS-DVLREAGEPCGLKSICVYGGSSKGPQISAIRSGV-DI 244
Query: 595 VVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLE 699
V+GTPGR+ +LDE D+ML+
Sbjct: 245 VIGTPGRLRDLIESNVLRLSDVSFVVLDEADRMLD 279
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 53.6 bits (123), Expect = 1e-07
Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 8/138 (5%)
Frame = +1
Query: 310 ECIPQAVLGMDILCQAKSGMGKTAVFVL------ATLQQLEPSES--HVYVLVMCHTREL 465
+ IP A+ G +L A +G GKTA F++ T PS+ + +V+ TREL
Sbjct: 2 QAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTREL 61
Query: 466 AFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXX 645
Q+ + + K + + ++ GG P+ ++ +++GTPGR++
Sbjct: 62 CVQVEDQAKMLGKGLP-FKTALVVGGDPMSGQLYRIQQGV-ELIIGTPGRVVDLLSKHTI 119
Query: 646 XXXXXXXFILDECDKMLE 699
F+LDE D ML+
Sbjct: 120 ELDNIMTFVLDEVDCMLQ 137
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 52.4 bits (120), Expect = 3e-07
Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 7/159 (4%)
Frame = +1
Query: 244 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSE 423
L +I+ A+ GFE + VQ E IP D++ A +G GKT F+L ++ + S
Sbjct: 24 LSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSN 83
Query: 424 SH------VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTAC 585
S+ V +++ TREL+ QI K VR+ F ++ D L+
Sbjct: 84 SYPPKPHQVMGVIISPTRELSAQI-------HKVARAVRLD-FAKCREVEADMNTLEEEG 135
Query: 586 PHIVVGTPGRIL-AXXXXXXXXXXXXXXFILDECDKMLE 699
++++GTPGR+ ILDE D++L+
Sbjct: 136 ANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLD 174
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 51.6 bits (118), Expect = 5e-07
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 6/136 (4%)
Frame = +1
Query: 229 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 408
F + L ++RA+ G E P+ +Q IP + G D++ +AK+G GKT ++L LQ+
Sbjct: 48 FEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLLQK 107
Query: 409 LEPSES------HVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEV 570
L ++S ++ +REL Q+ E + +V D
Sbjct: 108 LFSADSVSKKKLAPSAFILVPSRELCQQVYTEVSSLIELCRVQLKAVQLTSSMSASDMRN 167
Query: 571 LKTACPHIVVGTPGRI 618
P I+V TP I
Sbjct: 168 ALAGLPEILVSTPACI 183
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 50.8 bits (116), Expect = 9e-07
Identities = 24/82 (29%), Positives = 44/82 (53%)
Frame = +1
Query: 166 STEVAPKKEVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDI 345
+TE +K+ ++ + H+ ++ L + A+ D GF+ PS Q CIP + G D+
Sbjct: 61 ATEAEVEKKGNDTFFADHTVSWKSLGLSDNVSIALRDSGFDRPSLTQAVCIPSILSGKDV 120
Query: 346 LCQAKSGMGKTAVFVLATLQQL 411
+ A++G GKT ++ + QL
Sbjct: 121 IVAAETGSGKTHGYLAPIIDQL 142
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 34.3 bits (75), Expect = 0.081
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Frame = +1
Query: 244 LKPEILRAIVDCGFEHPSEVQ----HECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQL 411
L P++ +A+ + G VQ HE I DI + +G GKT + L +Q L
Sbjct: 28 LNPKLKKALENMGISSLFPVQVAVWHETIGPGGFERDICVNSPTGSGKTLSYALPIVQLL 87
Query: 412 EPSESH-VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKD-EEVLKT 579
+ LV+ TR+LA Q+ ++ + + G+ V G I + +++KT
Sbjct: 88 ASRPVRCLRALVVLPTRDLALQVKDVFDAIAPAV-GLSVGSAVGQSSIAGEISQLIKT 144
>At4g23310.1 68417.m03359 receptor-like protein kinase, putative
similar to receptor-like protein kinase 4 (gi:13506745),
5 (gi:13506747), and 6 (gi:13506749) from Arabidopsis
thaliana; contains Pfam protein kinase domain PF00069
Length = 830
Score = 31.1 bits (67), Expect = 0.75
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +1
Query: 211 SIHSSGFRDFLLK--PEILRAIVDCGFEHPSEVQHECIPQAVLGMDILC 351
S +SSGFR+ + P+ + + DC + P EV H C+ AV I C
Sbjct: 63 SSYSSGFRNDAVGTFPDRVTGLFDCRGDLPPEVCHNCVAFAVKDTLIRC 111
>At1g51820.1 68414.m05841 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase GI:1321686 from (Arabidopsis thaliana); contains
leucine rich repeat (LRR) domains, Pfam:PF00560;
contains protein kinase domain, Pfam:PF00069
Length = 885
Score = 29.5 bits (63), Expect = 2.3
Identities = 21/52 (40%), Positives = 26/52 (50%)
Frame = -2
Query: 327 GLRNAFVLNFGRMLKTAINNSAEYLWLK*EVSKTRTVDGYVGSFNLLLWRHF 172
G RN F+LN+G LK I SA+ L K V V + N+LL HF
Sbjct: 665 GTRNRFILNWGTRLKIVI-ESAQGLEYLHNGCKPPMVHRDVKTTNILLNEHF 715
>At5g34960.1 68418.m04125 hypothetical protein includes At5g34960,
At2g14450, At1g35920
Length = 1033
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -3
Query: 290 CSKPQSTIARSISGLSKKSLKPELWMDT 207
C+K + I ++G++ K KP+ W DT
Sbjct: 285 CNKKVNHIHAGVNGVNNKGKKPKFWCDT 312
>At5g44960.1 68418.m05514 F-box family protein contains F-box domain
Pfam:PF00646
Length = 416
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 223 SGFRDFLLKPEILRAIVDCGFEHPSEVQHEC 315
+G+RD + E++ +VDCG +H H C
Sbjct: 90 NGYRDRFM--ELIGTVVDCGIQHLYVYMHTC 118
>At1g35920.1 68414.m04461 hypothetical protein includes At5g34960,
At2g14450, At1g35920
Length = 567
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 290 CSKPQSTIARSISGLSKKSLKPELWMDT 207
C+K + I ++G++ K KP W DT
Sbjct: 296 CNKKVNHIHAGVNGVNNKGKKPRFWCDT 323
>At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein
helicase, putative similar to SP|O75643 U5 small nuclear
ribonucleoprotein 200 kDa helicase {Homo sapiens};
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF02889:
Sec63 domain
Length = 2171
Score = 28.3 bits (60), Expect = 5.3
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 280 GFEHPSEVQHECIPQAVLGMD-ILCQAKSGMGKTAVFVLATLQQLE 414
G + + VQ + A+ + IL A +G GKT V +L LQQLE
Sbjct: 501 GMQQLNRVQSKVYDTALFKAENILLCAPTGAGKTNVAMLTILQQLE 546
>At3g44160.1 68416.m04734 chloroplast outer membrane protein-related
low similarity to chloroplastic outer envelope membrane
protein (OEP75) [Pisum sativum] GI:633607
Length = 362
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 329 SSVWTYFAKPSPVWVRQPCLFWQHCSS 409
S+V F +P P W Q C F QH S
Sbjct: 72 SNVLVAFRRPRPEWRPQQCFFIQHSLS 98
>At3g42110.1 68416.m04323 hypothetical protein
Length = 448
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -3
Query: 290 CSKPQSTIARSISGLSKKSLKPELWMDT 207
C+K + I + G++ K KP W DT
Sbjct: 233 CNKKVNHIHAGVHGVNNKGKKPRFWCDT 260
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,315,051
Number of Sequences: 28952
Number of extensions: 297667
Number of successful extensions: 825
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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