Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_D07
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    29   0.80 
SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe...    27   2.4  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    26   5.6  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    26   5.6  

>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = -1

Query: 294  HS*IFQ*FQLIQMEGLQICSCIFLSTQESFSEILSVEXYETXXXXMD--LLNWXL 136
            H  I Q  +++Q+ GL  C+ + L+  E+F  +LS++ Y       D  LL W L
Sbjct: 1991 HEDIRQDERVMQLFGL--CNNLLLADPETFKRLLSIQRYPVIPLSPDSGLLGWVL 2043


>SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/59 (20%), Positives = 27/59 (45%)
 Frame = +3

Query: 258 FVSAEIIERSKSEARIKISNVLMLLTALASFGAILSGKAAAKRGESVHQMNLDWHKKYQ 434
           F S + + R    A++   +V +  + +   G+++ G   +     +   N+DW  KY+
Sbjct: 36  FESYKSLHRDPKYAKLSEQDVQVFKSIIGKDGSLIDGLDKSTDPADLDAFNIDWMNKYR 94


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 231 YKNKSEVPPFVSAEIIERSKSEARIKIS 314
           +K+  EVP FV   +++R      IK+S
Sbjct: 477 FKHTPEVPEFVQNRVLQRGDRHQSIKVS 504


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 237 SCIFLSTQESFSEILSVEXYE 175
           +CIF+ T  SF E+LS   YE
Sbjct: 135 TCIFIYTVSSFIELLSEPYYE 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,133,219
Number of Sequences: 5004
Number of extensions: 35050
Number of successful extensions: 74
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)