Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_D07
         (669 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52664| Best HMM Match : Filament (HMM E-Value=0.3)                  29   4.5  
SB_28965| Best HMM Match : Ribosomal_S9 (HMM E-Value=2.1)              28   6.0  
SB_8855| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.0  
SB_48165| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_37051| Best HMM Match : 7tm_1 (HMM E-Value=4.2e-38)                 28   7.9  
SB_34256| Best HMM Match : CRA_rpt (HMM E-Value=4)                     28   7.9  
SB_16094| Best HMM Match : 7tm_1 (HMM E-Value=0.16)                    28   7.9  

>SB_52664| Best HMM Match : Filament (HMM E-Value=0.3)
          Length = 394

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 375 AAKRGESVHQMNLDWHKKYQEEHKEKSSAK 464
           A + G+++ + N +W KKYQE  +E   AK
Sbjct: 34  AGELGKTLLEQNKEWEKKYQEMSEEYVIAK 63


>SB_28965| Best HMM Match : Ribosomal_S9 (HMM E-Value=2.1)
          Length = 346

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = +3

Query: 240 KSEVPPFVSAEIIERSKSEARIKI-SNVLMLLTALASFGAILSGKAAAKRGESVHQMNLD 416
           K ++    +   + +S ++A IK+  N   L     +FG  L  KA A   E   ++ + 
Sbjct: 214 KLDIGNLAAVVSVRKSTAKAFIKLRENQRGLNLVEKNFGLHLKNKAPALLEEKDIELLMT 273

Query: 417 WHKKYQEEHKEKSSAK 464
           + +KY+++ +E  +AK
Sbjct: 274 FREKYRQKERELENAK 289


>SB_8855| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 318

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/56 (21%), Positives = 28/56 (50%)
 Frame = +3

Query: 318 VLMLLTALASFGAILSGKAAAKRGESVHQMNLDWHKKYQEEHKEKSSAK*INKEFN 485
           V +L + L +  +++  +   +R + +HQ++  W  +YQ E +       +N  +N
Sbjct: 155 VFVLESVLITVESVIRVRVDNRRTDDIHQLDRQWPDRYQREMRRDDRLWLLNGMWN 210


>SB_48165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 483

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -1

Query: 651 FIRTLHTYIIHLTLKNQK*YYSKIYFQLYFHNFTKPYFRN*IEKQIK*FL 502
           FIR L + I+   ++  +  Y K Y Q Y   + KPY +    K  K ++
Sbjct: 391 FIRDLPSKILEAYIQTYRPKYYKPYIQTYCPKYYKPYIQTYCPKYHKPYI 440


>SB_37051| Best HMM Match : 7tm_1 (HMM E-Value=4.2e-38)
          Length = 383

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 512 LICFSI*FLK*GLVKL*KYNWK*ILL*YHFW-FFNVKCIIYVCN 640
           ++ F+   L   + +L  Y W+ +L  +HFW F+N    I + N
Sbjct: 268 VLTFATCMLPVNIFRLLTYFWRPVLSTFHFWTFYNAMVFITILN 311


>SB_34256| Best HMM Match : CRA_rpt (HMM E-Value=4)
          Length = 171

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = -2

Query: 380 SSSFPRQYCSKTCQSSKKHKHI*NFDSSFTLRSFNNFS*YKWRDFRFVLVFFCPHKNRFL 201
           +SS  + YC+K+C S+ + + I    ++    S       + R+  FV+   CP + + L
Sbjct: 94  NSSEDQDYCTKSCSSTDEVQEISTPPAARIKPSARKLPEKQKREDAFVMTELCPARRKSL 153

Query: 200 KF 195
            F
Sbjct: 154 LF 155


>SB_16094| Best HMM Match : 7tm_1 (HMM E-Value=0.16)
          Length = 219

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 512 LICFSI*FLK*GLVKL*KYNWK*ILL*YHFW-FFNVKCIIYVCN 640
           ++ F+   L   + +L  Y W+ +L  +HFW F+N    I + N
Sbjct: 92  VLTFATCMLPVNIFRLLTYFWRPVLSTFHFWTFYNAMVFITILN 135


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,926,009
Number of Sequences: 59808
Number of extensions: 229630
Number of successful extensions: 521
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)