Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_D07
         (669 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g66780.1 68418.m08418 expressed protein                             29   2.8  
At3g25560.2 68416.m03179 protein kinase family protein contains ...    29   2.8  
At3g25560.1 68416.m03178 protein kinase family protein contains ...    29   2.8  
At5g51540.1 68418.m06391 peptidase M3 family protein / thimet ol...    28   6.5  
At2g46375.1 68415.m05772 expressed protein                             28   6.5  
At3g57230.1 68416.m06371 MADS-box protein (AGL16) MADS-box trans...    27   8.5  

>At5g66780.1 68418.m08418 expressed protein
          Length = 121

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 348 FGAILSGKAAAKRGESVHQMNLDWHKKYQEEHKEKSSAK 464
           FG I  G    ++   +H+ + D+ K    E KEK  A+
Sbjct: 76  FGGIYGGNQTLQKENEIHENHPDYDKTQGSESKEKEKAR 114


>At3g25560.2 68416.m03179 protein kinase family protein contains
           Prosite:PS00108: Serine/Threonine protein kinases
           active-site signature and PS00107: Protein kinases
           ATP-binding region signature
          Length = 636

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +3

Query: 261 VSAEIIERSKSEARIKISNV-LMLLTALASFGAILSGKAAAKRGESVHQMNLDWHKKYQE 437
           ++ E +   +S  +  +    ++LL  +    A+  GKAA +RG       LDW KK Q+
Sbjct: 479 IAPEYLSTGQSSEKTDVFGFGILLLELITGLRALEFGKAANQRGAI-----LDWVKKLQQ 533

Query: 438 EHK 446
           E K
Sbjct: 534 EKK 536


>At3g25560.1 68416.m03178 protein kinase family protein contains
           Prosite:PS00108: Serine/Threonine protein kinases
           active-site signature and PS00107: Protein kinases
           ATP-binding region signature
          Length = 635

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +3

Query: 261 VSAEIIERSKSEARIKISNV-LMLLTALASFGAILSGKAAAKRGESVHQMNLDWHKKYQE 437
           ++ E +   +S  +  +    ++LL  +    A+  GKAA +RG       LDW KK Q+
Sbjct: 478 IAPEYLSTGQSSEKTDVFGFGILLLELITGLRALEFGKAANQRGAI-----LDWVKKLQQ 532

Query: 438 EHK 446
           E K
Sbjct: 533 EKK 535


>At5g51540.1 68418.m06391 peptidase M3 family protein / thimet
           oligopeptidase family protein low similarity to
           SP|Q99797 Mitochondrial intermediate peptidase,
           mitochondrial precursor (EC 3.4.24.59) {Homo sapiens};
           contains Pfam profile PF01432: Peptidase family M3
          Length = 860

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 308 NFKCAYASYCFGKFWSNIVWESCC*E 385
           N+   Y SY + K +++ +W+S C E
Sbjct: 624 NYGAGYYSYLYAKCFASTIWQSICEE 649


>At2g46375.1 68415.m05772 expressed protein
          Length = 123

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 372 AAAKRGESVHQMNLDWHKKYQEEHKEKSSAK 464
           A+ KRG  +H+    W+ K ++E KE+ + K
Sbjct: 75  ASTKRGPCIHRRKYWWNGKKKDEMKERINKK 105


>At3g57230.1 68416.m06371 MADS-box protein (AGL16) MADS-box
           transcription factor DEFH125 - Antirrhinum majus,
           PIR:T17029; contains Pfam domain PF00319: SRF-type
           transcription factor (DNA-binding and dimerisation
           domain); contains Pfam domain PF01486: K-box region
          Length = 240

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 381 KRGESVHQMNLDWHKKYQEEHKE 449
           + G  VHQ NLD HKK    H++
Sbjct: 154 REGNLVHQENLDLHKKVNLMHQQ 176


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,719,548
Number of Sequences: 28952
Number of extensions: 169084
Number of successful extensions: 393
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)