Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_D06
         (439 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   5.1  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    21   5.1  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    21   5.1  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    20   9.0  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
          transcriptase andRNase H protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = -3

Query: 80 WSGQRHGQESEENDE 36
          +SGQ+HG +S+  ++
Sbjct: 21 YSGQQHGPQSDSRNQ 35


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 77  SKPXGSAGTSSAISPIHAPGLRLYTRLS 160
           S P GS+   S+ S   +P  R+Y  +S
Sbjct: 38  SSPSGSSPQHSSSSASTSPAARMYPYVS 65


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 77  SKPXGSAGTSSAISPIHAPGLRLYTRLS 160
           S P GS+   S+ S   +P  R+Y  +S
Sbjct: 38  SSPSGSSPQHSSSSASTSPAARMYPYVS 65


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 302 SRKAQKSFGEMARNLLFLTNVISCR 228
           S   +K + + ARN  F T   SCR
Sbjct: 366 SESNRKFYFKRARNGTFSTTANSCR 390


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,866
Number of Sequences: 336
Number of extensions: 943
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9775509
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)