Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_D05
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom...    72   9e-14
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha...    50   2e-07
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    27   1.8  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    27   3.2  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    27   3.2  
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    26   4.2  
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    26   5.5  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    25   7.3  
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    25   9.7  

>SPAC6F12.13c |fps1||geranyltranstransferase
           Fps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 71.7 bits (168), Expect = 9e-14
 Identities = 36/99 (36%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
 Frame = +3

Query: 369 SSLXVIMT-LQNKSKLSEVPQ-IGDWLKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVT 542
           S+L V +  + N  K   +P  + +W K  L +N +GGK+ RG++ + SY+ +     + 
Sbjct: 12  SALPVFVDEIVNYLKTINIPDDVTEWYKNSLFHNTLGGKYNRGLSVIDSYEIL-LGHPLD 70

Query: 543 EHTLKLACKLGWCVEMFQAYCIVLDDIMDGSSVRRGMPC 659
           E     A  LGW VE+ Q++ ++ DDIMD S  RRG PC
Sbjct: 71  EAAYMKAAVLGWMVELLQSFFLIADDIMDASKTRRGQPC 109


>SPBC36.06c |spo9||farnesyl pyrophosphate
           synthetase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 351

 Score = 50.4 bits (115), Expect = 2e-07
 Identities = 27/79 (34%), Positives = 43/79 (54%)
 Frame = +3

Query: 423 PQIGDWLKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKLACKLGWCVEMFQAY 602
           P+  + L   +  N +GGK+ RG+  + S  ++   E + E   + A  LGW +E+ Q  
Sbjct: 37  PEETEKLLYSIKRNTLGGKNNRGLAVLQSLTSLINRE-LEEAEFRDAALLGWLIEILQGC 95

Query: 603 CIVLDDIMDGSSVRRGMPC 659
            ++ DDIMD S  RRG+ C
Sbjct: 96  FLMADDIMDQSIKRRGLDC 114


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 540 TEHTLKLACKLGWCVEMFQAYCIVLDDIMDGSSVRRGMP 656
           T   L    +L    EM     ++ DD++D ++VRRG P
Sbjct: 112 TGQILPSQLRLAQITEMIHIASLLHDDVIDHANVRRGSP 150


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 618 HPAQCNMPETFRHTIPAYRPISK 550
           HP++C++    R T+ +Y PIS+
Sbjct: 498 HPSECSLYRVSRDTLFSYHPISE 520


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 370 EIVEHFLFINYFEIF*GCRHICAIILISDQLWPIFVCNF 254
           E  + F+ ++YF IF    H+C+    S  +W   +C+F
Sbjct: 512 EYFKGFVKLDYFSIFITFLHVCSFGSNSFTVWEDRLCHF 550


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
 Frame = -3

Query: 351 FSLIISRFF-EAVVIFALLFLYLISCGQYLYV 259
           FSL+IS FF  +++I A+L L + SC  YL++
Sbjct: 171 FSLVISWFFTHSIIISAVLPLAISSC-MYLWM 201


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 417 EVPQIGDWLKKMLHYNLVGGKHTRGI 494
           E+ +I D+L+   H+  +GGK  RG+
Sbjct: 278 ELEEIVDFLRDPTHFTRLGGKLPRGV 303


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 532 SGFSIVLYEITVVIPLVCLPPTK 464
           +G    L+E++V +PL  +PP+K
Sbjct: 375 TGVEAPLFELSVSMPLTLIPPSK 397


>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 316 RHICAIILISDQLWPIF-VCNFTGNFEKIK 230
           +H   ++    +LW +    N TGNF+KIK
Sbjct: 241 KHPHVVVATPGRLWSVINENNLTGNFKKIK 270


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,466,512
Number of Sequences: 5004
Number of extensions: 49223
Number of successful extensions: 143
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)