Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_D05
         (659 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1273| Best HMM Match : polyprenyl_synt (HMM E-Value=3.64338e-44)    86   2e-17
SB_14751| Best HMM Match : DUF1602 (HMM E-Value=1.9)                   29   4.4  
SB_20950| Best HMM Match : PHD (HMM E-Value=0.2)                       28   5.9  

>SB_1273| Best HMM Match : polyprenyl_synt (HMM E-Value=3.64338e-44)
          Length = 303

 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 39/80 (48%), Positives = 54/80 (67%), Gaps = 3/80 (3%)
 Frame = +3

Query: 429 IGD---WLKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKLACKLGWCVEMFQA 599
           IGD   WL+++L YN+ GGK  RG++ + S + + + E  T+  L++A  LGWCVE FQA
Sbjct: 42  IGDSIKWLREVLEYNVPGGKRNRGLSVIGSLRHLIREEHFTDEHLRVALLLGWCVEWFQA 101

Query: 600 YCIVLDDIMDGSSVRRGMPC 659
           + +V DDIMD S  RRG PC
Sbjct: 102 FFLVADDIMDQSMTRRGQPC 121


>SB_14751| Best HMM Match : DUF1602 (HMM E-Value=1.9)
          Length = 334

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 1   AFWLSSFQSSXHLPPXRRXSSMLXIAASTHHFLLVFSCATPASP 132
           + +L S Q+S H P      S+L  + +     LVF  A P++P
Sbjct: 195 SLYLESLQASSHTPTSLSLESLLASSHTPTSLSLVFLQAAPSNP 238


>SB_20950| Best HMM Match : PHD (HMM E-Value=0.2)
          Length = 298

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 632 TIHNVIQHNAICLKHFDTPSQLTGQFQSMFGDFFRFFNCF 513
           T+H  +Q  A+ L+   TP+ L    Q      FR  NC+
Sbjct: 136 TVHEALQSVAVTLRVTTTPAALNAPLQGASHSPFRLRNCW 175


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,317,817
Number of Sequences: 59808
Number of extensions: 357016
Number of successful extensions: 1017
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)