Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_D05
(659 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
J05262-1|AAA52423.1| 353|Homo sapiens FDPS protein. 87 7e-17
M29863-1|AAA35820.1| 346|Homo sapiens protein ( Human farnesyl ... 86 1e-16
D14697-1|BAA03523.2| 420|Homo sapiens KIAA1293 protein. 86 1e-16
BC010004-1|AAH10004.1| 419|Homo sapiens farnesyl diphosphate sy... 86 1e-16
AL139410-1|CAI12715.1| 419|Homo sapiens farnesyl diphosphate sy... 86 1e-16
Z47055-1|CAA87327.1| 348|Homo sapiens farnesyl pyrophosphate sy... 80 6e-15
BC050292-1|AAH50292.1| 298|Homo sapiens LOC619190 protein protein. 66 1e-10
>J05262-1|AAA52423.1| 353|Homo sapiens FDPS protein.
Length = 353
Score = 86.6 bits (205), Expect = 7e-17
Identities = 38/82 (46%), Positives = 56/82 (68%), Gaps = 3/82 (3%)
Frame = +3
Query: 423 PQIGDW---LKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKLACKLGWCVEMF 593
P+IGD LK++L YN +GGK+ RG+T V++++ + +P K +L+ A +GWCVE+
Sbjct: 36 PEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELL 95
Query: 594 QAYCIVLDDIMDGSSVRRGMPC 659
QA+ +V DDIMD S RRG C
Sbjct: 96 QAFFLVADDIMDSSLTRRGQTC 117
>M29863-1|AAA35820.1| 346|Homo sapiens protein ( Human farnesyl
pyrophosphate synthetase mRNA (hpt807), 3' end. ).
Length = 346
Score = 85.8 bits (203), Expect = 1e-16
Identities = 38/82 (46%), Positives = 56/82 (68%), Gaps = 3/82 (3%)
Frame = +3
Query: 423 PQIGDW---LKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKLACKLGWCVEMF 593
P+IGD LK++L YN +GGK+ RG+T V++++ + +P K +L+ A +GWCVE+
Sbjct: 29 PEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELL 88
Query: 594 QAYCIVLDDIMDGSSVRRGMPC 659
QA+ +V DDIMD S RRG C
Sbjct: 89 QAFFLVADDIMDSSLTRRGQIC 110
>D14697-1|BAA03523.2| 420|Homo sapiens KIAA1293 protein.
Length = 420
Score = 85.8 bits (203), Expect = 1e-16
Identities = 38/82 (46%), Positives = 56/82 (68%), Gaps = 3/82 (3%)
Frame = +3
Query: 423 PQIGDW---LKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKLACKLGWCVEMF 593
P+IGD LK++L YN +GGK+ RG+T V++++ + +P K +L+ A +GWCVE+
Sbjct: 103 PEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELL 162
Query: 594 QAYCIVLDDIMDGSSVRRGMPC 659
QA+ +V DDIMD S RRG C
Sbjct: 163 QAFFLVADDIMDSSLTRRGQIC 184
>BC010004-1|AAH10004.1| 419|Homo sapiens farnesyl diphosphate
synthase (farnesyl pyrophosphate synthetase,
dimethylallyl protein.
Length = 419
Score = 85.8 bits (203), Expect = 1e-16
Identities = 38/82 (46%), Positives = 56/82 (68%), Gaps = 3/82 (3%)
Frame = +3
Query: 423 PQIGDW---LKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKLACKLGWCVEMF 593
P+IGD LK++L YN +GGK+ RG+T V++++ + +P K +L+ A +GWCVE+
Sbjct: 102 PEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELL 161
Query: 594 QAYCIVLDDIMDGSSVRRGMPC 659
QA+ +V DDIMD S RRG C
Sbjct: 162 QAFFLVADDIMDSSLTRRGQIC 183
>AL139410-1|CAI12715.1| 419|Homo sapiens farnesyl diphosphate
synthase (farnesyl pyrophosphate synthetase,
dimethylallyl protein.
Length = 419
Score = 85.8 bits (203), Expect = 1e-16
Identities = 38/82 (46%), Positives = 56/82 (68%), Gaps = 3/82 (3%)
Frame = +3
Query: 423 PQIGDW---LKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKLACKLGWCVEMF 593
P+IGD LK++L YN +GGK+ RG+T V++++ + +P K +L+ A +GWCVE+
Sbjct: 102 PEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELL 161
Query: 594 QAYCIVLDDIMDGSSVRRGMPC 659
QA+ +V DDIMD S RRG C
Sbjct: 162 QAFFLVADDIMDSSLTRRGQIC 183
>Z47055-1|CAA87327.1| 348|Homo sapiens farnesyl pyrophosphate
synthetase like-4 protein.
Length = 348
Score = 80.2 bits (189), Expect = 6e-15
Identities = 36/82 (43%), Positives = 53/82 (64%), Gaps = 3/82 (3%)
Frame = +3
Query: 423 PQIGDW---LKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKLACKLGWCVEMF 593
P+IGD LK++L YN +GGK+ R +T ++++ + P K +L+ A +GWCVE+
Sbjct: 31 PEIGDAIARLKEVLEYNAIGGKYNRRLTVAVAFRELVDPRKQDADSLQRAWTVGWCVELL 90
Query: 594 QAYCIVLDDIMDGSSVRRGMPC 659
QA+ +V DDIMD S RRG C
Sbjct: 91 QAFFLVADDIMDSSLTRRGQIC 112
>BC050292-1|AAH50292.1| 298|Homo sapiens LOC619190 protein protein.
Length = 298
Score = 65.7 bits (153), Expect = 1e-10
Identities = 29/79 (36%), Positives = 51/79 (64%), Gaps = 3/79 (3%)
Frame = +3
Query: 423 PQIGDW---LKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKLACKLGWCVEMF 593
P+ GD LK++L YN +GGK+ RG+ +++++ + +P K+ +L+ A +GW ++
Sbjct: 4 PETGDATARLKEVLEYNAIGGKYHRGLMVLVAFRELVEPRKLDADSLQWAPTVGWYAQLL 63
Query: 594 QAYCIVLDDIMDGSSVRRG 650
QA+ +V DDIMD S +G
Sbjct: 64 QAFFLVADDIMDSSLTCQG 82
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,340,690
Number of Sequences: 237096
Number of extensions: 1645341
Number of successful extensions: 2825
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2825
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7422585720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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