Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_D05
         (659 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81106-1|CAB03221.2|  352|Caenorhabditis elegans Hypothetical pr...    49   3e-06
AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin syntha...    29   2.9  
AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin syntha...    29   2.9  
Z49128-5|CAA88955.1|  676|Caenorhabditis elegans Hypothetical pr...    28   6.8  
U80443-7|AAB37678.2|  393|Caenorhabditis elegans Coenzyme q (ubi...    28   6.8  
Z81129-6|CAB03412.1|  799|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>Z81106-1|CAB03221.2|  352|Caenorhabditis elegans Hypothetical
           protein R06C1.2 protein.
          Length = 352

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 20/72 (27%), Positives = 39/72 (54%)
 Frame = +3

Query: 444 KKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKLACKLGWCVEMFQAYCIVLDDI 623
           + +    ++GGK++R    V + + ++   +     L+  C+    +E+ Q++ ++ DDI
Sbjct: 42  RNLFDNTVIGGKYSRASLCVDTIRALQPHLRDETQELQAVCEAAATLEIIQSFYLIADDI 101

Query: 624 MDGSSVRRGMPC 659
           MD S  RRG PC
Sbjct: 102 MDNSETRRGKPC 113


>AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin synthase 2
            protein.
          Length = 1668

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
 Frame = +3

Query: 366  ISSLXVIMTLQNKSKL--SEVPQIGDWLKKMLHYNLVGGK-HTRGITTVISYKTIEKP-- 530
            IS    I+TL        S V  + D +KK        G+ H RG   ++ Y+  E    
Sbjct: 856  ISENTFILTLDGDVDFTPSSVYLLVDLMKKNRRLGAACGRIHPRGDGAMVWYQKFEYAIG 915

Query: 531  ---EKVTEHTLK-LACKLGWCVEMFQAYCIVLDDI 623
               +K TEH +  + C  G C  +F+AY ++ D++
Sbjct: 916  HWLQKATEHMIGCVMCSPG-CFSLFRAYALMDDNV 949


>AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin synthase
            protein 2 protein.
          Length = 1668

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
 Frame = +3

Query: 366  ISSLXVIMTLQNKSKL--SEVPQIGDWLKKMLHYNLVGGK-HTRGITTVISYKTIEKP-- 530
            IS    I+TL        S V  + D +KK        G+ H RG   ++ Y+  E    
Sbjct: 856  ISENTFILTLDGDVDFTPSSVYLLVDLMKKNRRLGAACGRIHPRGDGAMVWYQKFEYAIG 915

Query: 531  ---EKVTEHTLK-LACKLGWCVEMFQAYCIVLDDI 623
               +K TEH +  + C  G C  +F+AY ++ D++
Sbjct: 916  HWLQKATEHMIGCVMCSPG-CFSLFRAYALMDDNV 949


>Z49128-5|CAA88955.1|  676|Caenorhabditis elegans Hypothetical
           protein M03C11.5 protein.
          Length = 676

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/51 (31%), Positives = 31/51 (60%)
 Frame = +3

Query: 351 RKCSTISSLXVIMTLQNKSKLSEVPQIGDWLKKMLHYNLVGGKHTRGITTV 503
           +K +T++   +   L +++KL EV +I D+LK    Y+ +GG+  +G+  V
Sbjct: 193 KKSNTLTRFYIF--LMDEAKL-EVEEIVDYLKDPEKYSRLGGRLPKGVLLV 240


>U80443-7|AAB37678.2|  393|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 1 protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 567 KLGWCVEMFQAYCIVLDDIMDGSSVRRG 650
           K+G   EM     +V DD++D ++ RRG
Sbjct: 137 KIGMIAEMIHTASLVHDDVIDEANTRRG 164


>Z81129-6|CAB03412.1|  799|Caenorhabditis elegans Hypothetical
           protein T23F1.7b protein.
          Length = 799

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 22/97 (22%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
 Frame = +2

Query: 233 NFLKITRKVTYKYWPQLIRYKNNSANMTTASKNLEIINEKKMFDDLLPXSNYDTTKQIQV 412
           N  +IT     KY+  +    N   N    + +L+I+N  +  + LLP    +  +++  
Sbjct: 110 NGAEITPSADRKYFAMMDHAPNPGMNPQNETFHLKIVNNNERLNPLLPFEVEELFRELSD 169

Query: 413 I*SAPNRGLVEKDASLQ-FGWR*TYKRNNYCDFIQNN 520
                + GL ++++ +Q F W    K N++  F+++N
Sbjct: 170 SRITYDIGLRKEESVIQAFKW--NGKFNDFV-FVESN 203


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,808,106
Number of Sequences: 27780
Number of extensions: 280887
Number of successful extensions: 718
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)