Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_D05
         (659 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    32   0.004
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   4.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   4.5  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   7.9  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   7.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   7.9  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   7.9  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   7.9  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 32.3 bits (70), Expect = 0.004
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +3

Query: 438 WLKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKLACKLGWCVEMFQAYCI 608
           W+   +H      +   GITTV++  TI    +     ++ A  L W + M   YCI
Sbjct: 263 WVSFWIHREATSDRVGLGITTVLTLSTISLDSRTDLPKVRYATALDWFLLMSFGYCI 319


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 25/98 (25%), Positives = 37/98 (37%)
 Frame = -3

Query: 366 SSNIFFSLIISRFFEAVVIFALLFLYLISCGQYLYVTLRVILRKLNXXXXXXXXXXMR** 187
           S  +FF L+        +   LL  YL+     + VTL V++               R  
Sbjct: 277 SLTVFFLLLAEIIPPTSLTVPLLGKYLLFT--MVLVTLSVVVTIAVLNVNFRSPVTHRMA 334

Query: 186 NQIRFYFQHFSPRCXTQPRRGRSGAGEDEEKVMSGGRN 73
             +R  F    PR     R  +    E+EE+V+  GRN
Sbjct: 335 RWVRVVFIQVLPRFLLIERPKKDEDEEEEEEVVVVGRN 372


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/34 (20%), Positives = 18/34 (52%)
 Frame = -2

Query: 580 HHPSLQANFKVCSVTFSGFSIVLYEITVVIPLVC 479
           H+P+ + N  VC+       ++ +   +++ +VC
Sbjct: 797 HYPTREDNLLVCNSYVDASYMIAFAYPIMLIVVC 830


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 571 WDGVSKCFRHIAL 609
           WDGV  CF + +L
Sbjct: 366 WDGVCMCFIYASL 378


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 571 WDGVSKCFRHIAL 609
           WDGV  CF + +L
Sbjct: 335 WDGVCMCFIYASL 347


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 571 WDGVSKCFRHIAL 609
           WDGV  CF + +L
Sbjct: 386 WDGVCMCFIYASL 398


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 571 WDGVSKCFRHIAL 609
           WDGV  CF + +L
Sbjct: 335 WDGVCMCFIYASL 347


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +3

Query: 438 WLKKMLHYNLVGGKHTRGITTVISYKTI 521
           W+   +++     +   GITTV++  TI
Sbjct: 260 WVSFWINHEATSARVALGITTVLTMTTI 287


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,462
Number of Sequences: 438
Number of extensions: 3943
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)