Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_D05
         (659 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17190.1 68417.m02586 farnesyl pyrophosphate synthetase 2 (FP...    94   6e-20
At5g47770.1 68418.m05901 farnesyl pyrophosphate synthetase 1, mi...    91   6e-19
At1g78510.1 68414.m09151 solanesyl diphosphate synthase (SPS) id...    33   0.13 
At1g17050.1 68414.m02073 geranyl diphosphate synthase, putative ...    32   0.29 
At5g20050.1 68418.m02387 protein kinase family protein contains ...    30   1.6  
At4g18200.1 68417.m02705 purine permease family protein similar ...    28   6.3  
At2g44880.1 68415.m05587 pentatricopeptide (PPR) repeat-containi...    28   6.3  

>At4g17190.1 68417.m02586 farnesyl pyrophosphate synthetase 2 (FPS2)
           / FPP synthetase 2 / farnesyl diphosphate synthase 2
           identical to SP|Q43315 Farnesyl pyrophosphate synthetase
           2 (FPP synthetase 2) (FPS 2) (Farnesyl diphosphate
           synthetase 2) [Includes: Dimethylallyltransferase (EC
           2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)]
           {Arabidopsis thaliana}
          Length = 342

 Score = 94.3 bits (224), Expect = 6e-20
 Identities = 40/74 (54%), Positives = 53/74 (71%)
 Frame = +3

Query: 438 WLKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKLACKLGWCVEMFQAYCIVLD 617
           WL++ML YN+ GGK  RG++ V SYK +++ + +TE    L+C LGWC+E  QAY +VLD
Sbjct: 34  WLERMLDYNVRGGKLNRGLSVVDSYKLLKQGQDLTEKETFLSCALGWCIEWLQAYFLVLD 93

Query: 618 DIMDGSSVRRGMPC 659
           DIMD S  RRG PC
Sbjct: 94  DIMDNSVTRRGQPC 107


>At5g47770.1 68418.m05901 farnesyl pyrophosphate synthetase 1,
           mitochondrial (FPS1) / FPP synthetase 1 / farnesyl
           diphosphate synthase 1 identical to SP|Q09152 Farnesyl
           pyrophosphate synthetase 1, mitochondrial precursor (FPP
           synthetase 1) (FPS 1) (Farnesyl diphosphate synthetase
           1) [Includes: Dimethylallyltransferase (EC 2.5.1.1);
           Geranyltranstransferase (EC 2.5.1.10)] {Arabidopsis
           thaliana}
          Length = 384

 Score = 91.1 bits (216), Expect = 6e-19
 Identities = 38/74 (51%), Positives = 52/74 (70%)
 Frame = +3

Query: 438 WLKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKLACKLGWCVEMFQAYCIVLD 617
           W+ +ML YN+ GGK  RG++ V S+K +++   +TE  + L+C LGWC+E  QAY +VLD
Sbjct: 76  WVDRMLDYNVRGGKLNRGLSVVDSFKLLKQGNDLTEQEVFLSCALGWCIEWLQAYFLVLD 135

Query: 618 DIMDGSSVRRGMPC 659
           DIMD S  RRG PC
Sbjct: 136 DIMDNSVTRRGQPC 149


>At1g78510.1 68414.m09151 solanesyl diphosphate synthase (SPS)
           identical to solanesyl diphosphate synthase [Arabidopsis
           thaliana] GI:19911233; contains Pfam profile PF00348:
           Polyprenyl synthetase
          Length = 406

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
 Frame = +3

Query: 471 GGKHTR-GITTVISYKTIEKP---EKVTEHTLKLACKLGWCVEMFQAYCIVLDDIMDGSS 638
           GGK  R G+  ++S+ T E     E  TEH      +L   +EM     ++ DD++D S 
Sbjct: 124 GGKRMRPGLVFLVSHATAELAGLKELTTEHR-----RLAEIIEMIHTASLIHDDVLDESD 178

Query: 639 VRRG 650
           +RRG
Sbjct: 179 MRRG 182


>At1g17050.1 68414.m02073 geranyl diphosphate synthase, putative /
           GPPS, putative / dimethylallyltransferase, putative /
           prenyl transferase, putative similar to GI:11322965;
           Except for first 55 amino acids, 52% identical to Prenyl
           transferase (Cyanophora paradoxa) (gi 99282). Location
           of est 120E9T7 (gb|T43950)
          Length = 417

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = +3

Query: 471 GGKHTR-GITTVISYKTIEKPEKVTEHTLKLACKLGWCVEMFQAYCIVLDDIMDGSSVRR 647
           GGK  R G+  ++S  T E    + E T++   +LG  +EM     ++ DD++D S +RR
Sbjct: 135 GGKRMRPGLVFLVSRATAELAG-LKELTVEHR-RLGEIIEMIHTASLIHDDVLDESDMRR 192

Query: 648 G 650
           G
Sbjct: 193 G 193


>At5g20050.1 68418.m02387 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 452

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
 Frame = +3

Query: 375 LXVIMTLQNKSKLSEVPQIGDWLKKMLHY--NLVGGK-HTRGITTVISYKTIEKPEKVTE 545
           + ++  +  +  +S V ++ +  KK L Y   +V  K   R I  ++  + IE  E   E
Sbjct: 300 IVLLEMIGGRRSISRV-EVKETKKKKLEYFPRIVNQKMRERKIMEIVDQRLIEVNEVDEE 358

Query: 546 HTLKLACKLGWCVE 587
             +KL C   WC++
Sbjct: 359 EVMKLVCVALWCIQ 372


>At4g18200.1 68417.m02705 purine permease family protein similar to
           purine permease [Arabidopsis thaliana] GI:7620007;
           contains Pfam profile PF03151: Domain of unknown
           function, DUF250
          Length = 1128

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
 Frame = -3

Query: 474 RQPNCNEASFSTNPLFGALQITWIC---FVVS*LLXGRRSSNIFFSLII-SRFFEAVVIF 307
           RQP   + +FS +P F  L   ++C    V +       +   FFS  + S+ F  +++ 
Sbjct: 489 RQPKSTDTNFSQSPSFTTLASVYLCTGLLVSAYAYLSALAFTAFFSYFLNSQKFTPLIVS 548

Query: 306 ALLFLYLIS 280
           +LL L + S
Sbjct: 549 SLLLLTVSS 557


>At2g44880.1 68415.m05587 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 555

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = +3

Query: 402 KSKLSEVP--QIGDWLKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKLACKLG 575
           K    E+P  Q+  W   M+H   + G     +   ++    EKP+++T   +  AC  G
Sbjct: 329 KRIFDEMPEKQVASW-NAMIHGYALNGNARAALDLFVTMMIEEKPDEITMLAVITACNHG 387

Query: 576 WCVE 587
             VE
Sbjct: 388 GLVE 391


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,796,740
Number of Sequences: 28952
Number of extensions: 251096
Number of successful extensions: 617
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)