Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_D03
         (667 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   5.2  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   5.2  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    21   9.1  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -1

Query: 160 EEHDKRATFIFRTTHHSHVKTFE 92
           EE+D+++  + +   H  +KTF+
Sbjct: 181 EEYDEQSLRVPKVNSHGKIKTFK 203


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 422 P*FDGQHVSPHLHH 381
           P   G H SPHL+H
Sbjct: 34  PGLQGLHHSPHLNH 47


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 216 LKLAILHQQPSQD 254
           L +AILH+Q +QD
Sbjct: 127 LSVAILHRQDTQD 139


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,103
Number of Sequences: 336
Number of extensions: 3756
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17281430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)