Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_D03
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    32   0.085
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    30   0.34 
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    28   1.1  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    27   1.8  
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ...    25   7.4  
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    25   9.8  
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    25   9.8  

>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 31.9 bits (69), Expect = 0.085
 Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 4/128 (3%)
 Frame = +2

Query: 8   PMERFALHIS-SCWCLLCRTFRKLFIVKLFKSFNM*VMSCTE-NESGP--FVVFFLPAIV 175
           P E F   +S S  C LC T    F+   F   N  V+  TE NE  P  +  F L ++V
Sbjct: 447 PSEPFPRTMSFSKMCPLCCTTLSKFVRHFFMFLNDSVILATEVNEKAPRFYRRFILRSLV 506

Query: 176 GCLTILLARRWANSQVSNTSSTAVSRRRKIIKDPLIKRPLPPIACKMVHPGAKKATGTNN 355
             L  L  +  A SQ+S       +      +DPL++     +  K +H    +A+ +NN
Sbjct: 507 DRLKSLYPKL-ALSQMSQLVKNFYA-----FEDPLLQIEKSLVLNKPIHQIGAEASSSNN 560

Query: 356 KKCTYPVE 379
            K T  +E
Sbjct: 561 VKSTELLE 568


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 18/67 (26%), Positives = 30/67 (44%)
 Frame = +2

Query: 185 TILLARRWANSQVSNTSSTAVSRRRKIIKDPLIKRPLPPIACKMVHPGAKKATGTNNKKC 364
           T +L       Q +      + RRR+++           + C   +P   KA  +NN +C
Sbjct: 10  TAVLFEAMKQEQHNRRRRVPMERRRRVVL-ACFNCKARKVRCDGANPC--KACASNNLEC 66

Query: 365 TYPVEDD 385
           TYPV+D+
Sbjct: 67  TYPVKDE 73


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
 Frame = -2

Query: 288 LLMSGSLIIFRR-LETAVDEVLLT*EFAQRLAKSIVRQPTIAGKKNTTKGPLSFSVQLIT 112
           LL  GS+I+ ++ LE  + E+ +       L  S+ + P +     TT   L F + L+ 
Sbjct: 279 LLEEGSIILVKQILEKELKELPVACYSIINLHDSLTQFPNLDFILKTTALVL-FIIFLVP 337

Query: 111 HMLKLLNSFTINNFLNVLHN 52
              KL N  +I + LN+LH+
Sbjct: 338 SFKKLQNEESILHLLNILHS 357


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/49 (32%), Positives = 30/49 (61%)
 Frame = +2

Query: 158  FLPAIVGCLTILLARRWANSQVSNTSSTAVSRRRKIIKDPLIKRPLPPI 304
            FLP I+  L+ +L    ++SQV NT++ ++ R   +I +P I+  +P +
Sbjct: 1519 FLPTIIPKLSEVLTD--SHSQVRNTANKSLLRFGDVISNPEIQTLVPTL 1565


>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 138 LSFSVQLITHMLKLLNSFTINNFLNVLHNK 49
           L  S  LI  +L L+ ++   N LNVLH++
Sbjct: 130 LDSSTALIKQLLDLVQNYPTFNQLNVLHDR 159


>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 551

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -2

Query: 453 SVTVGAVFGVTLV*RP-TRFPPLTSSSTGYVHFLLFVPVAFFAPG 322
           S+T    FG+  V    T  PP+ + ST  ++ +  + +  FAPG
Sbjct: 277 SLTEAVQFGIDYVHGAITHSPPINNCSTNILNHMTRLRIVPFAPG 321


>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 282 LRDLCLLSLVKWFTLERKRPQGRII 356
           L+ +  LSLV WF L+++  + RII
Sbjct: 4   LKIVLFLSLVIWFNLKKRTDKKRII 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,872,129
Number of Sequences: 5004
Number of extensions: 59967
Number of successful extensions: 140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)