Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_D03
         (667 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_56678| Best HMM Match : WD40 (HMM E-Value=6.4e-22)                  29   2.6  
SB_6096| Best HMM Match : Chitin_bind_3 (HMM E-Value=1.9e-06)          29   3.4  
SB_28577| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.00012)         28   7.9  
SB_5310| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.9  
SB_40237| Best HMM Match : TPR_2 (HMM E-Value=0.00034)                 28   7.9  

>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3235

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = +2

Query: 116  MSCTENESGPFVVFFLPAIVGCLTILLARRWANSQVSNTSSTAVSRRRKIIKDPLIKRPL 295
            M+CTEN+ G + V + P + G  TI +  ++A  Q S T  T +   R+       K   
Sbjct: 3121 MNCTENQDGTYQVTYYPVVAGEYTISI--KFA-GQTSPTVLTTLPSSRQAGTSSTAKATR 3177

Query: 296  PPI 304
            P +
Sbjct: 3178 PSV 3180


>SB_56678| Best HMM Match : WD40 (HMM E-Value=6.4e-22)
          Length = 834

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +2

Query: 23  ALHISSCWCLLCRTFRKLFI-VKLFKSFNM*VMSCTENESGPFVVFFLPAIVGCLTILLA 199
           ALH+S+  C LC +F++ F+ V +  + N   ++C   +S      F  A+ G  T  L 
Sbjct: 476 ALHLSAQRCCLCNSFKRSFVLVCVLDTQNTPDVACNHRQSQTRTQSFF-AVAGASTGTLK 534

Query: 200 R 202
           R
Sbjct: 535 R 535


>SB_6096| Best HMM Match : Chitin_bind_3 (HMM E-Value=1.9e-06)
          Length = 295

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -2

Query: 528 GPSWGICGNGMCFGGMGPSASLIS-ASVTVGAVFGVTLV*RPTRFPPLTSS 379
           G +WG C NG C  G+GP  + ++ A V +    GV     P   PP T +
Sbjct: 179 GNTWG-CENGKCGNGLGPQETFVNCADVKILPGNGVVPTQAPR--PPTTQT 226


>SB_28577| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.00012)
          Length = 281

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -2

Query: 528 GPSWGICGNGMCFGGMGPSASLIS-ASVTVGAVFGVTLV*RPTRFPPLTSS 379
           G SWG   +G C  G GP    ++ A +T+    GV     PT+ PP  S+
Sbjct: 176 GNSWGCDSDG-CGLGHGPQEHFVNCADITIIPKDGVLPTLPPTKAPPPRST 225


>SB_5310| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 219

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -2

Query: 174 TIAGKKNTTKGPLSFSVQLITHMLKLLNSFTINNFLNVLHNKH 46
           TIAGK+    G ++ + ++I   L     F   N LN L  KH
Sbjct: 70  TIAGKEQLLIGAMAKAFEIIPRQLCDNAGFDATNILNKLRQKH 112


>SB_40237| Best HMM Match : TPR_2 (HMM E-Value=0.00034)
          Length = 466

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -2

Query: 114 THMLKLLNSFTINNFLNVLHNKHQHDDMCKANLSIGRP 1
           TH L  LNS  +  +   + + HQ+ D  + N +  +P
Sbjct: 158 THYLSYLNSLRVGEYKQTVDSLHQYFDQQQGNKASSKP 195


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,663,874
Number of Sequences: 59808
Number of extensions: 455595
Number of successful extensions: 1063
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)