Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_C24
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    29   0.76 
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    27   4.1  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    27   4.1  
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha...    26   7.1  

>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +2

Query: 23  RRTPASLVRAKMSSIRNTNVYLQRLFEAILFFTYYS*RQ*KKSLK 157
           +R+P+SL +   +S R++  +LQRLF +  F    S R    S+K
Sbjct: 21  KRSPSSLSQRSKTSTRSSKPFLQRLFPSTWFKNESSSRHPLTSIK 65


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
 Frame = +3

Query: 477 AFAVRLIDVKIHGMVRVVMKPLISKIPLVGGLQIFFLNNPSIDFNLVGA------ADILD 638
           +F + + D+++ G +R+    L S  P +      FL  P +  N+         ADI  
Sbjct: 382 SFPITIKDLRLSGKLRIRWG-LSSDYPFIQTASFSFLETPIVYANIRPIDIPFLDADIFY 440

Query: 639 MPGFSDILRRCIVEQVSKMMVLPNKLSIKLS 731
           +PG    +   +   ++ M++ PN     LS
Sbjct: 441 IPGIGQFVSEQLGLLLNSMVLWPNMFDYDLS 471


>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1466

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +1

Query: 25   AYARFVSSRQNVINSKYERISTTII*SNSLFY-ILFLTSVEKIVEVIRENCHVHV 186
            A A  VS+ + + +   +++ T I  ++ L +  L L   EKIV    +NC++H+
Sbjct: 1017 ALANIVSNTKELTDGGTKKLQTLITFNDGLDWSYLNLVGGEKIVPKCGKNCYLHL 1071


>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -1

Query: 533 HYNTYHAMNLNINKSNGKSGG 471
           H  TY+A+N+N++ S G SGG
Sbjct: 193 HGYTYNALNINLS-SGGSSGG 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,162,826
Number of Sequences: 5004
Number of extensions: 64523
Number of successful extensions: 144
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)