Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_C24
(791 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0108 - 20912236-20912364,20912470-20912601,20912718-209130... 52 4e-07
02_03_0065 - 14629676-14629804,14631119-14631247,14631383-146317... 50 3e-06
06_03_1177 + 28174909-28175016,28176386-28176484,28177188-281772... 48 9e-06
08_02_0098 - 12324664-12324822,12325430-12325543,12325649-123259... 45 6e-05
01_06_1149 - 34901338-34901466,34901707-34901838,34901940-349022... 42 4e-04
04_04_1357 + 32860677-32860781,32861484-32861588,32861678-328617... 40 0.002
05_07_0354 - 29507068-29507170,29507406-29507431,29508264-295083... 30 2.4
10_08_0158 - 15298902-15299111,15300557-15300655,15301375-153014... 29 3.2
04_01_0271 + 3612066-3614056,3614666-3614780 29 4.2
10_08_0367 - 17236838-17236852,17237051-17237152,17237246-17238283 28 7.4
>09_06_0108 -
20912236-20912364,20912470-20912601,20912718-20913071,
20913161-20913407,20913489-20913565,20913971-20914045,
20914118-20914219,20914329-20914447,20914861-20914984,
20915081-20915131,20915247-20915345,20915839-20915949
Length = 539
Score = 52.4 bits (120), Expect = 4e-07
Identities = 22/84 (26%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Frame = +3
Query: 486 VRLIDVKIHGMVRVVMKPLISKIPLVGGLQIFFLNNPSIDFNL-VGAADILDMPGFSDIL 662
V+++D+++ R+ +KPL+ P + + + P +DF L + AD++ +PG +
Sbjct: 167 VQIVDLQVFASPRITLKPLVPTFPCFAKILVSLMEKPHVDFGLKLFGADLMAIPGLYRFV 226
Query: 663 RRCIVEQVSKMMVLPNKLSIKLSD 734
+ I +QV+ M + P L + + D
Sbjct: 227 QETIKKQVASMYLWPKTLEVPIMD 250
>02_03_0065 -
14629676-14629804,14631119-14631247,14631383-14631736,
14631817-14632063,14632155-14632231,14632574-14632648,
14632721-14632822,14632966-14633084,14633538-14633627,
14634866-14635022,14635085-14635098,14635425-14635548,
14635628-14635678,14635793-14635891,14636962-14637072
Length = 625
Score = 49.6 bits (113), Expect = 3e-06
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +3
Query: 489 RLIDVKIHGMVRVVMKPLISKIPLVGGLQIFFLNNPSIDFNL-VGAADILDMPGFSDILR 665
++ID+ + + R+ +KPL+ P + + + P +DF L + AD++ +PG ++
Sbjct: 255 QVIDLHVFALPRITLKPLVPSFPCFAKIVVSLMEKPHVDFGLKLLGADLMAIPGLYVFVQ 314
Query: 666 RCIVEQVSKMMVLPNKLSIKLSD 734
I QV+ M + P L + + D
Sbjct: 315 EIIKTQVANMYLWPKVLEVPIMD 337
>06_03_1177 +
28174909-28175016,28176386-28176484,28177188-28177238,
28177394-28177517,28177765-28177883,28177954-28178055,
28178124-28178198,28178390-28178466,28178920-28179169,
28179311-28179664,28179807-28179941,28180097-28180225
Length = 540
Score = 48.0 bits (109), Expect = 9e-06
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 2/104 (1%)
Frame = +3
Query: 483 AVRLIDVKIHGMVRVVMKPLISKIPLVGGLQIFFLNNPSID--FNLVGAADILDMPGFSD 656
+ +L+D+ I RV +KPL+ P L + + P ID F L+G D++ +PG
Sbjct: 165 SAQLLDLHIMLTPRVTLKPLVPSFPCFANLCVSLMEKPHIDFGFKLLG-GDVMAIPGLHR 223
Query: 657 ILRRCIVEQVSKMMVLPNKLSIKLSDEIPTVDLRMPXPEGVLRI 788
+R I +Q++ + P + I + DE + P G+L +
Sbjct: 224 FVREKISKQIANLYHWPKLIQIPILDEASGATKK---PVGILHV 264
>08_02_0098 -
12324664-12324822,12325430-12325543,12325649-12325921,
12326124-12326354,12326444-12326594,12326680-12326759,
12326839-12326913,12326992-12327093,12328000-12328121,
12329726-12329791,12330158-12330201,12330850-12330898,
12330967-12331087,12334631-12334735
Length = 563
Score = 45.2 bits (102), Expect = 6e-05
Identities = 21/94 (22%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Frame = +3
Query: 450 LNLSAPEATAFAVRLIDVKIHGMVRVVMKPLISKIPLVGGLQIFFLNNPSIDFNL-VGAA 626
L++ + V++ ++ G++R+V KPL++++P G + +DF L V
Sbjct: 156 LDIQTTLGISLPVQVKNIGFTGVLRLVFKPLVAELPCFGAVCCSLREKSKVDFTLKVIGG 215
Query: 627 DILDMPGFSDILRRCIVEQVSKMMVLPNKLSIKL 728
++ +PG SD + I + + + PN++ + +
Sbjct: 216 EMTAIPGISDAIEGTIRDTIEDQLTWPNRIVVPI 249
>01_06_1149 -
34901338-34901466,34901707-34901838,34901940-34902290,
34902301-34902619,34902756-34902784,34903641-34903715,
34903799-34903900,34904002-34904120,34904752-34904875,
34904976-34905026,34905143-34905241,34905751-34905861
Length = 546
Score = 42.3 bits (95), Expect = 4e-04
Identities = 17/71 (23%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Frame = +3
Query: 486 VRLIDVKIHGMVRVVMKPLISKIPLVGGLQIFFLNNPSIDFNL-VGAADILDMPGFSDIL 662
++++D+++ R+ +KPL++ IP + + + P +DF L + AD++ +P +
Sbjct: 167 IQVVDLQVFASPRITLKPLVATIPCFAKILVSLMEKPHVDFGLKLLGADVMAIPILYSFV 226
Query: 663 RRCIVEQVSKM 695
+ I +QV+ +
Sbjct: 227 QETIKKQVASI 237
>04_04_1357 +
32860677-32860781,32861484-32861588,32861678-32861728,
32861829-32861949,32862495-32862616,32863032-32863133,
32863226-32863300,32863391-32863470,32863601-32863751,
32863850-32864080,32864221-32864517,32864638-32864751,
32864857-32865030
Length = 575
Score = 40.3 bits (90), Expect = 0.002
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = +3
Query: 450 LNLSAPEATAFAVRLIDVKIHGMVRVVMKPLISKIPLVGGLQIFFLNNPSIDFNL-VGAA 626
L++ + +++ D+ G+ R++ KPL+ ++P G + +DF L V
Sbjct: 155 LDVKTRLGVSLPIQVKDIGFTGVFRLIFKPLVDQLPCFGAVCFSLRKKKKLDFRLKVIGG 214
Query: 627 DILDMPGFSDILRRCIVEQVSKMMVLP 707
+I +PG SD L I + + P
Sbjct: 215 EISAIPGISDALEDTIKNAIEDSITWP 241
>05_07_0354 -
29507068-29507170,29507406-29507431,29508264-29508301,
29508722-29508825,29509005-29509024,29509251-29509299,
29510319-29510406,29510463-29510562,29510660-29510737,
29512688-29512804,29513718-29513821,29514497-29514569,
29514904-29514981,29515091-29515215,29515278-29515341,
29515439-29515597,29515950-29516048,29516496-29516624,
29517010-29517075,29517160-29517304,29517379-29517500,
29517683-29517838,29517918-29518029,29518891-29519036,
29519148-29519252,29519391-29519540,29519703-29519776,
29519902-29520055,29520142-29520408
Length = 1016
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -2
Query: 196 LTAQHAHGNFHESLQRFFLLTLRII 122
L+A H G F E+LQR FLLT +++
Sbjct: 912 LSAHHQSGGFVEALQRCFLLTPKLL 936
>10_08_0158 -
15298902-15299111,15300557-15300655,15301375-15301443,
15301535-15301681,15301762-15301839,15302221-15302264,
15302521-15302603,15303394-15303620
Length = 318
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 477 RWLPGLTDSADKAPEEQPEASPRQERGP 394
R L GL D AP QP S +++RGP
Sbjct: 56 RRLDGLDIQGDDAPSSQPATSKKKKRGP 83
>04_01_0271 + 3612066-3614056,3614666-3614780
Length = 701
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +2
Query: 500 C*DSWHGTCCNETFDL*NTVSRRTTDLLFEQPLNR---LQSRW 619
C D W TC + + + NTV R ++ ++ +N L+ RW
Sbjct: 415 CEDWWDSTCYSHSIKIPNTVKERAVKMVSKRAINTLGLLRHRW 457
>10_08_0367 - 17236838-17236852,17237051-17237152,17237246-17238283
Length = 384
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = -2
Query: 571 SPPTNGILEIKGFITTRTMP*ILTSISRTAKAVASGADRFS*QGARGAAGG 419
SP +LE+ F +T T P S + A++SG DR + G G GG
Sbjct: 52 SPRKRMLLELPPFASTPTAP---APGSASPGALSSGGDRSTRTGGSGGGGG 99
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,504,628
Number of Sequences: 37544
Number of extensions: 410910
Number of successful extensions: 1092
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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