Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_C24
         (791 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48082| Best HMM Match : No HMM Matches (HMM E-Value=.)             105   4e-23
SB_3985| Best HMM Match : C2 (HMM E-Value=0)                           93   2e-19
SB_5572| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.9  
SB_3986| Best HMM Match : C2 (HMM E-Value=2.9e-31)                     30   1.9  
SB_41690| Best HMM Match : DSL (HMM E-Value=0)                         28   7.5  
SB_25448| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_14410| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_42271| Best HMM Match : DUF229 (HMM E-Value=0)                      28   10.0 
SB_31700| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=6.8)            28   10.0 

>SB_48082| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 665

 Score =  105 bits (252), Expect = 4e-23
 Identities = 49/102 (48%), Positives = 71/102 (69%)
 Frame = +3

Query: 483 AVRLIDVKIHGMVRVVMKPLISKIPLVGGLQIFFLNNPSIDFNLVGAADILDMPGFSDIL 662
           +V + D+++ G +RV+M PL+   PLVGG+ +FFLN P IDF+L    +ILD+PG SDIL
Sbjct: 220 SVGIEDLQLRGTLRVIMSPLVPSAPLVGGISVFFLNRPDIDFDLTNLLNILDIPGLSDIL 279

Query: 663 RRCIVEQVSKMMVLPNKLSIKLSDEIPTVDLRMPXPEGVLRI 788
           R  + + V+  +VLPN++ I L+D  P   L+ P P+GVLRI
Sbjct: 280 RGVVGDVVASFVVLPNRICIPLTDVDP-YKLKYPLPDGVLRI 320


>SB_3985| Best HMM Match : C2 (HMM E-Value=0)
          Length = 835

 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 39/99 (39%), Positives = 65/99 (65%)
 Frame = +3

Query: 492 LIDVKIHGMVRVVMKPLISKIPLVGGLQIFFLNNPSIDFNLVGAADILDMPGFSDILRRC 671
           L   K++G++RV+ KPL+S    +GG+ +FFLN P   F+L    ++LD PG +  LRR 
Sbjct: 269 LTKFKLNGILRVIFKPLVSLYNPIGGVTVFFLNRPKTKFDLTNLLNVLDFPGLNSTLRRI 328

Query: 672 IVEQVSKMMVLPNKLSIKLSDEIPTVDLRMPXPEGVLRI 788
           + + ++  +VLPN+++I L++ +   DL+ P P GVLR+
Sbjct: 329 VDDTIASFVVLPNRVAIPLAEGVDASDLQYPIPPGVLRV 367


>SB_5572| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 11/17 (64%), Positives = 16/17 (94%)
 Frame = +3

Query: 498 DVKIHGMVRVVMKPLIS 548
           D+KIHG +RV++KPL+S
Sbjct: 52  DLKIHGPLRVILKPLLS 68


>SB_3986| Best HMM Match : C2 (HMM E-Value=2.9e-31)
          Length = 778

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 11/17 (64%), Positives = 16/17 (94%)
 Frame = +3

Query: 498 DVKIHGMVRVVMKPLIS 548
           D+KIHG +RV++KPL+S
Sbjct: 194 DLKIHGPLRVILKPLLS 210


>SB_41690| Best HMM Match : DSL (HMM E-Value=0)
          Length = 2798

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
 Frame = +2

Query: 392  NGPRSCLGEASG--CSSGALSAESVSPGSHRFCR---STY*C*DSWHGTCCN 532
            NG R CL +  G  C++   S    S GS+ +C+       C D WHG  CN
Sbjct: 1877 NGERICLDDWYGGNCTTYCKS----SNGSYYYCKHDSGKRVCLDDWHGERCN 1924


>SB_25448| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 538

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -3

Query: 465 GLTDSADKAPEEQPEASPRQERGPFR*RSSVLSPS 361
           G  + A   P  Q    PR +R PFR RS  L+PS
Sbjct: 207 GAHNMAGGHPRVQHVTDPRIDRVPFRRRSKALAPS 241


>SB_14410| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 710

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -3

Query: 465 GLTDSADKAPEEQPEASPRQERGPFR*RSSVLSPS 361
           G  + A   P  Q    PR +R PFR RS  L+PS
Sbjct: 107 GAHNMAGGHPRVQHVTDPRIDRVPFRRRSKALAPS 141


>SB_42271| Best HMM Match : DUF229 (HMM E-Value=0)
          Length = 591

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 165 TNHFNDFFY*R*E*YVKKRIASNNRCRYTFVFRIDDILART 43
           T+H++ +++   E Y++K   SNN+  +   F     L RT
Sbjct: 355 TDHYSRYYWMEAENYIRKEFCSNNQAMHNMTFNYLLSLFRT 395


>SB_31700| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=6.8)
          Length = 126

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -3

Query: 756 ADQPLESHRLV*SKAC*AAPSFSTLAPRCIDEGC 655
           AD P     +V S    A+P FST +PR I   C
Sbjct: 3   ADNPYARRMVVNSSPGPASPGFSTESPRSISNSC 36


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,882,825
Number of Sequences: 59808
Number of extensions: 495444
Number of successful extensions: 1341
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1338
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)