Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_C24
         (791 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20990.1 68415.m02485 C2 domain-containing protein (sytA) sim...    57   1e-08
At1g20080.1 68414.m02513 C2 domain-containing protein contains I...    57   1e-08
At5g04220.2 68418.m00411 C2 domain-containing protein (sytC) GC ...    56   3e-08
At5g11100.1 68418.m01296 C2 domain-containing protein similar to...    40   0.003
At1g05500.1 68414.m00561 C2 domain-containing protein similar to...    35   0.054
At2g18220.1 68415.m02123 expressed protein contains Pfam domain ...    29   2.7  

>At2g20990.1 68415.m02485 C2 domain-containing protein (sytA)
           similar to Ca2+-dependent lipid-binding protein (CLB1)
           GI:2789434 from [Lycopersicon esculentum]
          Length = 541

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
 Frame = +3

Query: 486 VRLIDVKIHGMVRVVMKPLISKIPLVGGLQIFFLNNPSIDFNL-VGAADILDMPGFSDIL 662
           V+++D+++    R+ +KPL+   P    + +  +  P +DF L +G AD++ +PG    +
Sbjct: 167 VQVVDLQVFAQPRITLKPLVPSFPCFANIYVSLMEKPHVDFGLKLGGADLMSIPGLYRFV 226

Query: 663 RRCIVEQVSKMMVLPNKLSIKLSDEIPTVDLRMP 764
           +  I +QV+ M + P  L + + D  P    R P
Sbjct: 227 QEQIKDQVANMYLWPKTLVVPILD--PAKAFRRP 258


>At1g20080.1 68414.m02513 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 535

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 25/94 (26%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
 Frame = +3

Query: 486 VRLIDVKIHGMVRVVMKPLISKIPLVGGLQIFFLNNPSIDFNL-VGAADILDMPGFSDIL 662
           V++ID++++   R+ +KPL+   P    + +  ++ P +DF L +  AD++ +PG    +
Sbjct: 165 VQVIDLQVYATPRITLKPLVPSFPCFANIFVSLMDKPQVDFGLKLLGADVMAIPGLYRFV 224

Query: 663 RRCIVEQVSKMMVLPNKLSIKLSDEIPTVDLRMP 764
           +  I +QV+ M + P  L++++ D  P+  ++ P
Sbjct: 225 QEIIKDQVANMYLWPKTLNVQIMD--PSKAMKKP 256


>At5g04220.2 68418.m00411 C2 domain-containing protein (sytC) GC
           donor splice site at exon 3; similar to Ca2+-dependent
           lipid-binding protein (CLB1) GI:2789434 from
           [Lycopersicon esculentum]
          Length = 540

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
 Frame = +3

Query: 486 VRLIDVKIHGMVRVVMKPLISKIPLVGGLQIFFLNNPSIDFNL-VGAADILDMPGFSDIL 662
           V+L+D++   +VRV +KPL+   P  G + +  +  P +DF L V   D++ +PG    +
Sbjct: 167 VQLVDLQFFAIVRVALKPLLPTFPCFGMVVVSLMEKPHVDFGLKVLGGDLMSIPGLYRYV 226

Query: 663 RRCIVEQVSKMMVLPNKLSIKLSDEIPTVDLRMP 764
           +  I  QVS M   P  L I + D   T  ++ P
Sbjct: 227 QETIKRQVSSMYHWPQVLEIPILDS-STASVKKP 259


>At5g11100.1 68418.m01296 C2 domain-containing protein similar to
           Ca2+-dependent lipid-binding protein (CLB1) GI:2789434
           from [Lycopersicon esculentum]
          Length = 574

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = +3

Query: 486 VRLIDVKIHGMVRVVMKPLISKIPLVGGLQIFFLNNPSIDFNL-VGAADILDMPGFSDIL 662
           + + ++   G+ R++ KPL+ + P  G L         +DF L V   ++  +PG SD +
Sbjct: 176 IEVKNIGFTGVFRLIFKPLVDEFPCFGALSYSLREKKGLDFTLKVIGGELTSIPGISDAI 235

Query: 663 RRCIVEQVSKMMVLP 707
              I + +   +  P
Sbjct: 236 EETIRDAIEDSITWP 250


>At1g05500.1 68414.m00561 C2 domain-containing protein similar to
           Ca2+-dependent lipid-binding protein (CLB1) GI:2789434
           from [Lycopersicon esculentum]
          Length = 528

 Score = 35.1 bits (77), Expect = 0.054
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 486 VRLIDVKIHGMVRVVMKPLISKIPLVGGLQIFFLNNPSIDFNL-VGAADILDMPGFSDIL 662
           +++ ++   G+ R++ +PL+   P  G + +       +DF L V   DI  +PG S+ +
Sbjct: 132 IQVKNIGFTGVFRLIFRPLVEDFPCFGAVSVSLREKKKLDFTLKVVGGDISAIPGLSEAI 191


>At2g18220.1 68415.m02123 expressed protein contains Pfam domain
           PF03715: Uncharacterised protein family (UPF0120)
          Length = 779

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 474 WLPGLTDSADKAPEEQPEASPRQERG 397
           WLPG +DS +K PEE+     +++RG
Sbjct: 671 WLPG-SDSKEKEPEEEKTKKKKRKRG 695


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,508,180
Number of Sequences: 28952
Number of extensions: 333899
Number of successful extensions: 803
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)