BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fcaL-P01_F_C17 (738 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 299 3e-82 SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 298 5e-82 SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce... 27 2.1 SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 27 2.8 SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 27 3.7 SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 27 3.7 SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz... 26 4.9 SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 25 8.5 >SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Schizosaccharomyces pombe|chr 1|||Manual Length = 388 Score = 299 bits (733), Expect = 3e-82 Identities = 135/232 (58%), Positives = 173/232 (74%) Frame = +2 Query: 38 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 217 F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPGS Sbjct: 6 FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65 Query: 218 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 397 K++K+EI+EAVTIIETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKNW+ Sbjct: 66 KMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKS 125 Query: 398 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQL 577 + + +SI ++ +++ +YCSVVRV+AHTQ++ QKKAH+MEIQ+ Sbjct: 126 KKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQV 183 Query: 578 NGGTIEDKVKWAXEHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHT 733 NGG++ DKV+WA EH EK + + S F Q+EMID I +RW T Sbjct: 184 NGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGT 235 >SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 388 Score = 298 bits (732), Expect = 5e-82 Identities = 134/232 (57%), Positives = 173/232 (74%) Frame = +2 Query: 38 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 217 F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPGS Sbjct: 6 FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65 Query: 218 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 397 K++K+EI+EAVT+IETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKNW+ Sbjct: 66 KMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKS 125 Query: 398 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQL 577 + + +SI ++ +++ +YCSVVRV+AHTQ++ QKKAH+MEIQ+ Sbjct: 126 KKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQV 183 Query: 578 NGGTIEDKVKWAXEHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHT 733 NGG++ DKV+WA EH EK + + S F Q+EMID I +RW T Sbjct: 184 NGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGT 235 >SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces pombe|chr 3|||Manual Length = 554 Score = 27.5 bits (58), Expect = 2.1 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Frame = -3 Query: 199 FSNHVGHTGLITDKSSQMNRFARVVFRERLDLTTMTTGPLFGIESH-RPMXGVLKIF 32 F N VG G+I D S + +R+VF D +G L ++SH +P V IF Sbjct: 344 FMNVVGILGMIFDTSLSIVASSRLVFAVARDGVLPFSGWLRKVDSHGQPTNAVTFIF 400 >SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosaccharomyces pombe|chr 2|||Manual Length = 658 Score = 27.1 bits (57), Expect = 2.8 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%) Frame = +2 Query: 26 RTENFQHPXH--GSMGFYPKKRSRRHRGKVKAFPKDDPSKPV 145 ++E QHP +M FY + + G FP++ KP+ Sbjct: 186 KSEQVQHPQAVLDAMAFYSQSKKYLEEGAKPPFPRESTEKPL 227 >SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID complex subunit Taf111|Schizosaccharomyces pombe|chr 1|||Manual Length = 979 Score = 26.6 bits (56), Expect = 3.7 Identities = 18/51 (35%), Positives = 25/51 (49%) Frame = +3 Query: 297 TLRPLMDYALF*LSGRSICLKTVDVASTKTGTNARRRLSLKPVRNGRMSLD 449 TL DYA+ S +S+ LK V+ T T RRR + RN + L+ Sbjct: 219 TLEVDTDYAIIFNSKKSLPLKRNVVSPISTHTKKRRRTANTSQRNDGLDLN 269 >SPBP35G2.11c |||transcription related zf-ZZ type zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 397 Score = 26.6 bits (56), Expect = 3.7 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 1/70 (1%) Frame = +2 Query: 17 PACRTENFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDP-SKPVHLTAFIGYKAGMTHVV 193 P C H + S +P + G K FP D+P S P+ + G T + Sbjct: 291 PGCPFYKIWHIRNTSCQSWPSPLYVKFNGGDKLFPGDNPYSFPITSSVHPGEDVNFTVAL 350 Query: 194 REPDRPGSKI 223 + P++ +I Sbjct: 351 KVPEKSNKEI 360 >SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schizosaccharomyces pombe|chr 2|||Manual Length = 482 Score = 26.2 bits (55), Expect = 4.9 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = +2 Query: 491 CSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDK 601 C+VV + T M+ QRQ K I + LNG +++K Sbjct: 433 CTVVGTLTATAMRFYLQRQNK--IKQEILNGERVDEK 467 >SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 1502 Score = 25.4 bits (53), Expect = 8.5 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = -3 Query: 454 FASKLILPFLTGFSESLLLAFVPVFVEATST 362 F SKL L + F E + LAF+ F+E TS+ Sbjct: 1032 FFSKLTLQQVQEFYEVVPLAFINCFLEFTSS 1062 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,118,673 Number of Sequences: 5004 Number of extensions: 64249 Number of successful extensions: 164 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 156 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 162 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 349251756 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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