Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_C17
(738 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 294 5e-80
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 291 4e-79
11_01_0710 - 5830475-5830595,5831498-5834124 31 0.95
01_06_0083 + 26283492-26283756,26284255-26284467,26284620-262847... 31 0.95
04_04_1477 + 33873976-33874080,33874433-33874544,33874777-338748... 29 2.9
05_04_0324 - 20273797-20274261 29 3.9
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865... 29 3.9
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 294 bits (721), Expect = 5e-80
Identities = 133/231 (57%), Positives = 171/231 (74%), Gaps = 1/231 (0%)
Frame = +2
Query: 38 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 217
F+HP HGS+GF P+KRS RHRGKVK+FPKDD SKP HLT+F+GYKAGMTH+VRE ++PGS
Sbjct: 6 FEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREVEKPGS 65
Query: 218 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 397
K++KKE EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYKNW
Sbjct: 66 KLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKS 125
Query: 398 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAHIMEIQ 574
+ + G+K I+ +KM +Y S+VRVIAHTQ++ +K +QKKAH+MEIQ
Sbjct: 126 KKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQKKAHLMEIQ 185
Query: 575 LNGGTIEDKVKWAXEHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRW 727
+NGGTI DKV + + EK IPVD+VF +DEMID I +RW
Sbjct: 186 INGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRW 236
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 291 bits (714), Expect = 4e-79
Identities = 132/231 (57%), Positives = 170/231 (73%), Gaps = 1/231 (0%)
Frame = +2
Query: 38 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 217
F+HP HGS+GF P+KRS RHRGKVK+FPKDD +KP HLT+F+GYKAGMTH+VRE ++PGS
Sbjct: 6 FEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREVEKPGS 65
Query: 218 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 397
K++KKE EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYKNW
Sbjct: 66 KLHKKETCEAVTIIETPPIVVVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKS 125
Query: 398 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAHIMEIQ 574
+ + G+K I+ +KM +Y SVVRVI HTQ++ +K +QKKAH+MEIQ
Sbjct: 126 KKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASVVRVIVHTQIRKMKGLKQKKAHLMEIQ 185
Query: 575 LNGGTIEDKVKWAXEHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRW 727
+NGGTI DKV + + EK IPVD+VF +DEMID I +RW
Sbjct: 186 INGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRW 236
>11_01_0710 - 5830475-5830595,5831498-5834124
Length = 915
Score = 31.1 bits (67), Expect = 0.95
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 678 QSIISSWANTESTGIGFSRCSXAHFTLSSMVPPLSWISIM 559
+S+ISSW + TG S CS + + PLS S++
Sbjct: 650 ESVISSWGGSVHTGTSSSSCSVTNLVVKFCTLPLSQWSLL 689
>01_06_0083 +
26283492-26283756,26284255-26284467,26284620-26284771,
26284884-26285157,26285277-26285485
Length = 370
Score = 31.1 bits (67), Expect = 0.95
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 457 NRKRFQEDDPLL*CCKSHCPHSNEAVKTATKEGSHYGNP 573
N +RF +DPLL CC H P+ A T + + +G+P
Sbjct: 297 NPRRFGINDPLLACCGGHGPYHTGA--TCDRTATVWGDP 333
>04_04_1477 +
33873976-33874080,33874433-33874544,33874777-33874874,
33875548-33876261,33876348-33876518,33876955-33877011,
33877096-33878718
Length = 959
Score = 29.5 bits (63), Expect = 2.9
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +2
Query: 557 HIMEIQLNGGTIEDKVKWAXEHLEKPIPVDS 649
H++E + N ++++K+K +H E +P+DS
Sbjct: 460 HLLEDRENNESVDEKIKGDAQHEENTLPLDS 490
>05_04_0324 - 20273797-20274261
Length = 154
Score = 29.1 bits (62), Expect = 3.9
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +2
Query: 116 FPKDDPSKPVHLTAFIGYKAGMTHVVRE--PDRPGSKINKKEIVEAVTIIETPPMVCVGV 289
FP D+P K VH+ G + +T ++ E P + +N EA + P CVGV
Sbjct: 60 FPPDNPQKFVHVHRVFG-ASNVTKLLNELHPYQREDAVNSL-AYEADMRLRDPVYGCVGV 117
Query: 290 VGYIETPHGLRAL 328
+ ++ H LR L
Sbjct: 118 ISVLQ--HQLRQL 128
>04_04_1035 + 30283456-30283536,30284823-30285359,30285508-30286512,
30286718-30287042,30287563-30287818,30287901-30288117,
30288743-30289095,30289330-30289833,30291267-30292467,
30292614-30292970,30293258-30293495,30294083-30295125,
30295234-30296649,30296731-30296855,30297036-30297314,
30297352-30297382,30298957-30299022,30299447-30299689,
30299848-30299898,30299980-30300071,30300182-30300249,
30300515-30300600,30300720-30300824,30300994-30301127,
30302403-30302436,30302620-30302892,30303019-30303288,
30303384-30303974,30304065-30304214
Length = 3376
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +2
Query: 530 LLKQRQKKAHIMEIQLNGGTIEDKVKWAXEHLEKPIPVDSVFAQDEMI 673
L Q K+ ++E +++ ++ D+V L KP PV F DE++
Sbjct: 2664 LTSQHGKRIAVIENEVHDFSMPDRVNAINPGLAKPGPVIETFCSDELV 2711
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,002,074
Number of Sequences: 37544
Number of extensions: 448172
Number of successful extensions: 1022
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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