Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_C15
         (430 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    25   5.0  
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch...    25   6.6  

>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1185

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = -2

Query: 273  NGHTFSVRVED*AVVTVAGLNEGADASGVSQVRVVAGPHAGVISPMGIXQG 121
            +G    +RV++ A V    +   A  S +    V++ PH+GV+  + + QG
Sbjct: 1122 SGTIVEIRVKEGAKVKKGDII--AVLSAMKMEIVISAPHSGVLKSLAVVQG 1170


>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 681

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = +1

Query: 118 DALXNAHWTDDPCVRTCDDPYLTNTACVGALIQTCHCNDGLV 243
           D   N HW  DP     D    T+   VG+LI      + LV
Sbjct: 349 DRFDNYHWMPDPIDAAPDFKKPTDRDVVGSLISIFKSKEPLV 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,185,332
Number of Sequences: 5004
Number of extensions: 17449
Number of successful extensions: 37
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)