Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_C15
         (430 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15)                  29   2.2  
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_17530| Best HMM Match : EGF_CA (HMM E-Value=0)                      28   2.9  
SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)                   28   3.8  
SB_58993| Best HMM Match : EGF_CA (HMM E-Value=0)                      27   6.6  
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_55542| Best HMM Match : MinC_C (HMM E-Value=2.5)                    27   8.7  
SB_20082| Best HMM Match : DUF378 (HMM E-Value=4.1)                    27   8.7  

>SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15)
          Length = 1600

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 175 PYLTNTACVGALIQTCHCNDGLVFNADRKCVPIS 276
           PY     C+G L ++ +  DG++   DR  VP+S
Sbjct: 561 PYGEPVTCLGHLCESIYAQDGVLLLNDRVVVPMS 594


>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4924

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
 Frame = +1

Query: 184  TNTA---CVGAL-IQTCHCNDGLVF-NADRKCVPISDC 282
            TNT    C+  L   TC C  G  F N+ R+C+ I++C
Sbjct: 2113 TNTCPGRCINRLGSYTCDCPRGYTFDNSSRRCIDINEC 2150


>SB_17530| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 165

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +1

Query: 187 NTACVGALIQ-TCHCNDGLVFNADRKCVPISDC 282
           N  C  +L   TC C +G   N+  KC  +++C
Sbjct: 15  NEVCANSLGSFTCQCAEGYERNSQGKCADVNEC 47


>SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)
          Length = 705

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
 Frame = +1

Query: 154 CVRTCDDPYLTNTACVGALIQTCHCNDGLV--FNADRK--CVPISDC 282
           C  TC DP   N  C    ++ C C +  V   NA  K  C+   +C
Sbjct: 193 CPETCHDPPGRNKTCSMRCVEGCECKEEFVQRVNAVGKVQCIKRKEC 239


>SB_58993| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 541

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 217 TCHCNDGLVFNADRK-CVPISDC*NV 291
           TC C  G   +ADR+ C+ +++C +V
Sbjct: 19  TCQCIAGYTLSADRRHCIDVNECQDV 44


>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1465

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 154 CVRTCDDPYLTNTACVGALIQTCHCNDG 237
           CVR    P      C+G L QT HC +G
Sbjct: 703 CVRKSTSPADYIARCIGELNQTKHCFEG 730


>SB_55542| Best HMM Match : MinC_C (HMM E-Value=2.5)
          Length = 229

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 133 HFXGHPYSVVLASRAITATIRNTI 62
           HF GH  S + AS ++  TIR+TI
Sbjct: 177 HFYGHLVSGLTASASLQQTIRDTI 200


>SB_20082| Best HMM Match : DUF378 (HMM E-Value=4.1)
          Length = 568

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 154 CVRTCDDPYLTNTACVGALIQTCHCNDGLVFNA 252
           C RTC    L +T C+ A +     NDG VF A
Sbjct: 238 CDRTCSYWDLVSTTCMYARVTHFFDNDGTVFLA 270


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,419,551
Number of Sequences: 59808
Number of extensions: 146848
Number of successful extensions: 502
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)