Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_C14
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54231| Best HMM Match : Ammonium_transp (HMM E-Value=0)             30   2.1  
SB_11898| Best HMM Match : DMP1 (HMM E-Value=1.6)                      29   2.7  
SB_52733| Best HMM Match : DUF948 (HMM E-Value=0.37)                   29   3.6  
SB_17959| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_11561| Best HMM Match : HAT (HMM E-Value=1.1)                       29   4.8  
SB_22536| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_6260| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.3  

>SB_54231| Best HMM Match : Ammonium_transp (HMM E-Value=0)
          Length = 459

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
 Frame = -3

Query: 465 SDSHGRFCGVISKRICRLXPGASLGWNRLLTV--GSNGMVS----CRSTHGKCMWTAGSC 304
           SD  G    V +  I R+ PGA   W+ L T+  G  GMVS    C + +  C    G  
Sbjct: 228 SDVAGAGGAVTALFIKRIVPGAGKNWSLLTTINGGLTGMVSICAGCNAVYPYCALVIGIL 287

Query: 303 GVFT 292
           G  T
Sbjct: 288 GGMT 291


>SB_11898| Best HMM Match : DMP1 (HMM E-Value=1.6)
          Length = 1705

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -2

Query: 667 AKDAELPVPAPMVSS-DPIEISIDFTGRYVLPKIPENTYRKLRKE 536
           AKDAE  V  P+  S D +  S DFT   +  +I  +  RK++KE
Sbjct: 653 AKDAEKEVDTPVYESQDMLTSSGDFTSAEIGVEIEPSKKRKMKKE 697


>SB_52733| Best HMM Match : DUF948 (HMM E-Value=0.37)
          Length = 1147

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 486 GIPPPFASDSHGRFCGVISKRICRLXPGASLGWNRL 379
           G+PPP + D       V+ + IC L P +S GW+ L
Sbjct: 449 GLPPPTSKDFDITLIVVLLRNICLLKPPSS-GWDSL 483


>SB_17959| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 843

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
 Frame = -3

Query: 300 VFTSFITMELLRPRLTAIAVFPYTTECSPCKMTFPGA-----ETLTVNKLSTAVNIVLLM 136
           V T FIT+ELLR RL   A F  T   S     F G+     E   V    T +NI+L++
Sbjct: 79  VKTDFITIELLRGRLRYTANFGSTANISGFHEVFMGSHLADNEWHQVELRRTGLNILLIL 138


>SB_11561| Best HMM Match : HAT (HMM E-Value=1.1)
          Length = 409

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 1/121 (0%)
 Frame = +2

Query: 257 SLGLRSSIVIKEVNTPHEPAVHIHL-PCVDLQETIPLEPTVKSLFHPKLAPGXNRQILLE 433
           S+G   S V  +V     P V   + P V  + T  + P V     PK+ P    ++  +
Sbjct: 38  SVGPEPSKVTPKVTPKVTPKVTPKVTPKVTPKVTPKVTPKVTPKVTPKVTPKVTPKVTPK 97

Query: 434 ITPQNRP*LSLAKGGGIPAFDQA*L*LVAQQSKEFLA*FPIRVFRDFR*HISTGKVYGYF 613
           +TP+  P ++      + A   A L  V  +SK  L   P+R+  D   +++T   Y + 
Sbjct: 98  VTPKVTPKVTPKVTPKVTAVSSAGLCTV--RSKVLLNVVPVRITAD---NVNTTSTYAFL 152

Query: 614 D 616
           D
Sbjct: 153 D 153


>SB_22536| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 593

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/60 (25%), Positives = 26/60 (43%)
 Frame = -3

Query: 324 MWTAGSCGVFTSFITMELLRPRLTAIAVFPYTTECSPCKMTFPGAETLTVNKLSTAVNIV 145
           +WT  +  + T    ++L+   +TAIAV P         M  P   T+ +   S  + +V
Sbjct: 429 LWTGSTVVMPTHSAVIQLVHTHVTAIAVTPEMGAAVQISMNVPWERTVVMPTHSAVIQLV 488


>SB_6260| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 600

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -3

Query: 369 GSNGMVSCRS-THGKCMWTAGSCGVFT 292
           G  G + C+  T G   WT G+C VFT
Sbjct: 153 GLAGTIICKLITGGNFSWTGGACSVFT 179


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,138,802
Number of Sequences: 59808
Number of extensions: 531724
Number of successful extensions: 1606
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1600
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)