Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_C12
         (547 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    26   3.2  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    26   3.2  
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|...    26   4.2  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    25   5.5  
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.3  
SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subu...    25   9.6  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    25   9.6  
SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subun...    25   9.6  

>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
 Frame = +3

Query: 276 QKKGTRRVIGHLINN-----ESKSWNELTAKYDPENKFTAKYEKELRE 404
           + K T+ ++ HL        ESK   +LT +YDP   F A++ + + E
Sbjct: 289 EHKVTKSILPHLPRELQVLLESKRVQKLTEEYDPARMFLARWAEGIVE 336


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 213  KELKEHIRE-ALETECAKCTEAQKKGTRRVIGHLINNESKSWNELTAK 353
            KEL   +RE  L  + A+C +      +   G  I+N+  +WN+L  K
Sbjct: 1638 KELSVRLREDELRVQTARCMDCGTPFCQSDYGCPISNKIFTWNDLVFK 1685


>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
           Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 624

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 17/81 (20%), Positives = 33/81 (40%)
 Frame = +3

Query: 156 FFSLTSNVSSTRTGVPLXAKELKEHIREALETECAKCTEAQKKGTRRVIGHLINNESKSW 335
           F S T N++S +   PL  +  ++     +     +   +Q  G            +  +
Sbjct: 84  FISQTPNITSIKDPRPLSDRRYQQECATQVVNYLLESGFSQPLGLNNRFMPSTREFAAIF 143

Query: 336 NELTAKYDPENKFTAKYEKEL 398
             L  K DP  +F A+YE+++
Sbjct: 144 KHLYNKLDPNFRFGARYEEDV 164


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 161 QPYIKCILDKDRCAPXR*GVEGTHQGGTRDRMREMYRSPEE 283
           QP  K  +DK+     R   EGT QG  +  +R +  S EE
Sbjct: 181 QPIEKSSVDKENAKRKRYVEEGTKQGQKKKPLRVIELSDEE 221


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 23/87 (26%), Positives = 30/87 (34%)
 Frame = +3

Query: 84  QSLTXSTPIATTTLI*MRSSAILDFFSLTSNVSSTRTGVPLXAKELKEHIREALETECAK 263
           +SL   TP A      +  S       L    S  R  +    KEL +     +  E   
Sbjct: 109 RSLILQTPTAEANATQVTESLNQIQKILQEASSKDREQIVQVIKELNKGNSLEVRRELGN 168

Query: 264 CTEAQKKGTRRVIGHLINNESKSWNEL 344
           C    KKGT  +   L  +  K W EL
Sbjct: 169 CLAHLKKGTLNIDNALQASLQKYWKEL 195


>SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subunit
           Rpn502|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 92  DXKYTDRYDNVNLDEVLSNSRLLQPYIKCIL 184
           D +  D    +N D  L++  LLQ  +KC +
Sbjct: 268 DNEQADLLHRINADHKLNSLPLLQQLVKCFI 298


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 395 LLFVFGCKFIFGVVFSGQLIPGFAFV 318
           LLF F C +IF +V   + +  F  +
Sbjct: 299 LLFTFECLYIFSLVIDQETLSSFELI 324


>SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subunit
           Rpn501|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 92  DXKYTDRYDNVNLDEVLSNSRLLQPYIKCIL 184
           D +  D    +N D  L++  LLQ  +KC +
Sbjct: 268 DNEQADLLHRINADHKLNSLPLLQQLVKCFI 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,909,805
Number of Sequences: 5004
Number of extensions: 37472
Number of successful extensions: 109
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)