Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_C12
         (547 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0557 + 9450212-9450346,9450553-9450633,9450768-9451114,945...    29   1.8  
03_02_0348 + 7709894-7709926,7710516-7710604,7711202-7711277,771...    28   4.2  
03_03_0274 - 16089322-16089365,16089604-16089616,16090367-160907...    28   5.6  

>03_02_0557 + 9450212-9450346,9450553-9450633,9450768-9451114,
            9451345-9451945,9452206-9452239,9452514-9452577,
            9452909-9453325,9453439-9453523,9453773-9453831,
            9453931-9454043,9456407-9456509,9456597-9456654,
            9456781-9456834,9456922-9457131,9457254-9457312,
            9457436-9457495,9457709-9457802,9458366-9458506,
            9458562-9458741
          Length = 964

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 27/74 (36%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
 Frame = +3

Query: 153  DFFSLTSNVSSTRTGVPLXAKELKEHIREALETEC-AKCTEAQKKGTRRVIGHLINNESK 329
            DF  +   V +T T V + A  LK    E  E    A   E +KKG   ++  LI    K
Sbjct: 815  DFRGIYCAVLTTSTFV-VSAAILKVRTEEVAELVLIATHNECRKKGYFSLLLSLIEAHLK 873

Query: 330  SWNE--LTAKYDPE 365
            +WN   LTA  DPE
Sbjct: 874  AWNVRLLTAPVDPE 887


>03_02_0348 +
           7709894-7709926,7710516-7710604,7711202-7711277,
           7712019-7712214,7712449-7712832,7712884-7714804,
           7714906-7714966,7715952-7716371
          Length = 1059

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 23/84 (27%), Positives = 43/84 (51%)
 Frame = +3

Query: 186 TRTGVPLXAKELKEHIREALETECAKCTEAQKKGTRRVIGHLINNESKSWNELTAKYDPE 365
           T T   L A+E   H+  AL+ EC K     K+   + +  ++  ++K W ++ A+++ +
Sbjct: 149 TVTLAKLAAEERAAHLDGALK-ECMKQVRTVKEEGEQKLHDVVFAKTKQWEKIKAEFEAK 207

Query: 366 NKFTAKYEKELREIKA*DTNAKLS 437
                ++E+EL  I+A   N  LS
Sbjct: 208 ---LLEFEQEL--IRAGAENDALS 226


>03_03_0274 - 16089322-16089365,16089604-16089616,16090367-16090714,
            16090771-16090974,16091403-16091504,16091710-16091741,
            16092668-16093655,16094461-16094711,16095786-16097795,
            16097903-16097954
          Length = 1347

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +1

Query: 250  PNARNVPKPRRRVL 291
            P A NVP+PRRRVL
Sbjct: 1013 PGAANVPRPRRRVL 1026


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,114,881
Number of Sequences: 37544
Number of extensions: 237843
Number of successful extensions: 591
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)