Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_C12
(547 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6) 29 1.9
SB_25727| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_6803| Best HMM Match : 7tm_1 (HMM E-Value=4.3) 29 2.5
SB_51621| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0) 29 3.3
SB_39767| Best HMM Match : CBAH (HMM E-Value=0.86) 29 3.3
SB_35716| Best HMM Match : PC4 (HMM E-Value=1.1e-12) 29 3.3
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 28 4.3
SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65) 28 5.7
SB_39951| Best HMM Match : Dehydrin (HMM E-Value=5.2) 27 7.6
SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
>SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)
Length = 496
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -2
Query: 297 HVEYPSSGLRYI-SRIRSRVPP*CVPSTP*RXGAHLSLSRIHL 172
H+ YP S LRY+ S +R PP P +P R LS HL
Sbjct: 401 HLRYPPSSLRYLPSHLRYPPPPLRYPPSPLRYPPSLSPICHHL 443
>SB_25727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1758
Score = 29.1 bits (62), Expect = 2.5
Identities = 29/122 (23%), Positives = 46/122 (37%), Gaps = 5/122 (4%)
Frame = +3
Query: 54 PVCRFGRGSRQSLTXSTPIATTTLI*MRSSAILDFFSLTSNVSSTRTGVPLXAKELKEHI 233
P+C G +L P +T L +R+ + + T +++ R GV E
Sbjct: 393 PICTVGGDISANLRYFRPNSTADLETLRNKLMEINSTFTQYITNLRYGVNAGMVRTVEQC 452
Query: 234 REALETECAKCTEAQKKG-----TRRVIGHLINNESKSWNELTAKYDPENKFTAKYEKEL 398
+ + KG T +G L+ +SK + L D NK+ AKY K
Sbjct: 453 KRGINGLTESYPSIAFKGALGVYTENFMGELL--DSKFLSSLMNNTDEANKWRAKYGKTA 510
Query: 399 RE 404
E
Sbjct: 511 SE 512
>SB_6803| Best HMM Match : 7tm_1 (HMM E-Value=4.3)
Length = 129
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 223 RNTSGRHSRPNARNVPKPRRRVLDVLSAI 309
R T G HS+ N RN+ + RVL +L I
Sbjct: 30 RKTPGEHSKTNKRNMDNRKMRVLKMLLTI 58
>SB_51621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 510
Score = 28.7 bits (61), Expect = 3.3
Identities = 8/41 (19%), Positives = 21/41 (51%)
Frame = +3
Query: 270 EAQKKGTRRVIGHLINNESKSWNELTAKYDPENKFTAKYEK 392
+ + GT+ + G + K W E+ Y+ +N + ++++
Sbjct: 83 KVSESGTKNIFGGYSSKRMKDWQEIIRLYEKDNVYLGEFDE 123
>SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)
Length = 1291
Score = 28.7 bits (61), Expect = 3.3
Identities = 30/98 (30%), Positives = 40/98 (40%), Gaps = 6/98 (6%)
Frame = -3
Query: 461 FHCLAHFIA*FSICVLS---FDFTKLLF-VFGCKFIFGVVFSGQL--IPGFAFVIN*MAD 300
F + FI FS+ +L F T L VF +F VFS + I F+ +I +
Sbjct: 1132 FSVIILFITVFSVIILFITVFSVTILFITVFSVTILFITVFSVIILFITVFSVIILFITV 1191
Query: 299 NTSSTLLLGFGTFRAFGLECLPDVFLQLLSVQGHTCPC 186
+ LLL +F L C P FL S PC
Sbjct: 1192 FSIIILLLPCSPSSSFSLPCSPSSFLLPCSPSSFLLPC 1229
>SB_39767| Best HMM Match : CBAH (HMM E-Value=0.86)
Length = 1182
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/68 (23%), Positives = 30/68 (44%)
Frame = +3
Query: 21 HHQSAFPHRILPVCRFGRGSRQSLTXSTPIATTTLI*MRSSAILDFFSLTSNVSSTRTGV 200
HH+S P + RFG S + L + +S++++FF L++ + +
Sbjct: 567 HHESGGPFPAFFIARFGAVSGSDSVLERVVPLLFLKALETSSLIEFFLLSAKTTVSSCLA 626
Query: 201 PLXAKELK 224
L + LK
Sbjct: 627 TLLVRPLK 634
>SB_35716| Best HMM Match : PC4 (HMM E-Value=1.1e-12)
Length = 501
Score = 28.7 bits (61), Expect = 3.3
Identities = 27/115 (23%), Positives = 52/115 (45%)
Frame = +3
Query: 105 PIATTTLI*MRSSAILDFFSLTSNVSSTRTGVPLXAKELKEHIREALETECAKCTEAQKK 284
P + T I RSS +++ ++ S V TG P + L+ + T+ KC+ Q++
Sbjct: 2 PKKSYTKINKRSSDVVEKQAMDSPVK--HTGSPSNGEALEFPL-----TKKRKCSNDQEE 54
Query: 285 GTRRVIGHLINNESKSWNELTAKYDPENKFTAKYEKELREIKA*DTNAKLSYEMC 449
G + +++ ES + NE+T D K + + + + E K ++C
Sbjct: 55 GGKST--QMVSLESVAGNEMTGSPDSNKKQSGRKKHKKPECKGSQRKLGFQSDLC 107
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 28.3 bits (60), Expect = 4.3
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Frame = +3
Query: 213 KELKEHIREALETECAKCTEAQKK-----GTRRVIGHLINNESKSWNELTAKYDPENKFT 377
++ K + ALE AK TE ++ +++ + E++ NELT++ +
Sbjct: 2352 RKAKTELESALEEAKAKITEKEESLVAFAAESKIVRDQLERETEEKNELTSQIESLVDKV 2411
Query: 378 AKYEKELREIKA*DTNAKLSYEM 446
KYE+ + + N K + +M
Sbjct: 2412 KKYEEASSTVMKENENLKRNLQM 2434
>SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65)
Length = 1799
Score = 27.9 bits (59), Expect = 5.7
Identities = 19/66 (28%), Positives = 26/66 (39%)
Frame = +1
Query: 94 RQVHRSLXXXXXXXXXXXXSTSSALHQMYPRQGQVCPXTLRS*RNTSGRHSRPNARNVPK 273
R+V R+ T L + + QV +R R T H+R A NVP
Sbjct: 1413 RKVSRTPVLEPSHRVKTTAETKEILSKCICSKTQVKDEQVRGSRATQTSHTRDVAVNVPT 1472
Query: 274 PRRRVL 291
P+ R L
Sbjct: 1473 PKHRAL 1478
>SB_39951| Best HMM Match : Dehydrin (HMM E-Value=5.2)
Length = 225
Score = 27.5 bits (58), Expect = 7.6
Identities = 16/70 (22%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = +3
Query: 195 GVPLXAKELKEHIREALETECAKCTEAQKKGTRRVIGHLINNESKSWNEL---TAKYDPE 365
G+ + A+ +E +R T C++ + +++GT ++ ++ ++ K+ E+ +YD E
Sbjct: 121 GMKVSARSERESLRNF--TICSRIVKEKRRGTVALVPSMMTSKHKALTEIHDQILEYDAE 178
Query: 366 NKFTAKYEKE 395
K K + E
Sbjct: 179 KKKGKKEQAE 188
>SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5445
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +2
Query: 110 RYDNVNLDEVLSNSR-LLQPYIKCILDK 190
R DN+ L EVL N R LL+PY+K + ++
Sbjct: 3893 RKDNI-LHEVLKNGRELLRPYLKALFNR 3919
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,379,253
Number of Sequences: 59808
Number of extensions: 282174
Number of successful extensions: 776
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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