Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_C12
         (547 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55600.1 68418.m06932 agenet domain-containing protein / brom...    27   8.2  

>At5g55600.1 68418.m06932 agenet domain-containing protein /
           bromo-adjacent homology (BAH) domain-containing protein
           contains Pfam profile PF01426: BAH domain and PF05641:
           Agenet domain
          Length = 663

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +3

Query: 270 EAQKKGTRRVIGHLINNESKSWNELTAKYDPENKFTAKYEKEL 398
           EA+ +G  +    L+  ++K   ++  K D ENK + + +KE+
Sbjct: 573 EAEPEG-EKAYNSLLGEQNKEHKDVVVKEDDENKLSKEEDKEV 614


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,899,136
Number of Sequences: 28952
Number of extensions: 194445
Number of successful extensions: 552
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)