Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_C11
(746 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosacc... 29 0.53
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 29 0.93
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 28 1.6
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 2.8
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 27 3.8
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 26 5.0
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 26 6.6
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 26 6.6
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb... 26 6.6
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 25 8.7
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 25 8.7
>SPBC409.06 |uch2||ubiquitin C-terminal hydrolase
Uch2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 300
Score = 29.5 bits (63), Expect = 0.53
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Frame = +1
Query: 406 LTNTERIR----SIQFGEP-LPEDVQAAFDN--VLEYIDDIDTANDFYKMGGFAMFPICY 564
L N+E IR S +P + E+V+AA D V +I + N FY++ G PI +
Sbjct: 124 LGNSEHIRCCHNSFARSDPFISEEVRAATDEDEVYHFIAYTNINNVFYELDGLQAAPINH 183
Query: 565 GS--ENEKVRALASTVLAELCQNNP 633
GS + E S + A + +P
Sbjct: 184 GSCTKEEFAEKAVSVIQARIANYDP 208
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 28.7 bits (61), Expect = 0.93
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 308 NSEXPWCIFSFCGFHCKP*KSLQVSWLP 225
N E P C+ +HCKP L V W+P
Sbjct: 666 NVESP-CLMLQHSYHCKPNSKLNVFWMP 692
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 156 NNTIAGALTYPTRSQDEVLPNQPRQPRNLQGLL 254
++TI+ + PT+ ++ V PN P P + Q LL
Sbjct: 7 SSTISPTFSTPTKKRNLVFPNSPITPLHQQALL 39
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.1 bits (57), Expect = 2.8
Identities = 18/79 (22%), Positives = 36/79 (45%)
Frame = +1
Query: 199 KMKSYQISRGSQETCKDFYGLQWKPQKLKMHQGNSELGPIDDERRKFLEDALKSLTVNIA 378
K K Y+ + + + Y Q + + K+ Q N ++DE RK LE+ L + +
Sbjct: 44 KSKDYESIKNDRIVTEVNYEQQLRNSEKKLLQSNERYDLLEDE-RKLLENELSQIKEYLR 102
Query: 379 EVLLNAIRILTNTERIRSI 435
E + +L + ++S+
Sbjct: 103 EKSSSYDTVLHDCSSLKSV 121
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 26.6 bits (56), Expect = 3.8
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Frame = +1
Query: 271 PQKLKMHQGNSELGPIDDERRKFLE---DALKSLTVNIAEVLLNAIRILTNTERIRSIQF 441
P ++K H+ +SE P+D E K E D L + E L + NT++ ++
Sbjct: 796 PAEIKRHKESSETKPVDKEEVKKNEKEKDDPMRLAQQLLESLAPDFALHENTQQKSPVEK 855
Query: 442 GEPLPEDVQAAFDNVLEYIDDIDTAN 519
+ L +D A+ + +Y + A+
Sbjct: 856 PKKLRKDRYASVEE-FDYFSSTEHAS 880
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1465
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -1
Query: 497 IYSRTLSKAACTSSGSGSPNCMLRILSVLVRILMAFSNTSAM 372
+YSR A SSG C+ R+L RIL+ T+++
Sbjct: 1352 LYSRVAEGGANFSSGQRQLICLARVLLTSTRILLLDEATASV 1393
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 25.8 bits (54), Expect = 6.6
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = -1
Query: 224 RLIW*DFILTSCRISQSSGNRVILRIIRTHLLETQIFC--EISLVRNGIRN*AVKPTESR 51
RLIW + + +S S G + +T++ E C +IS N I + + + TE+
Sbjct: 365 RLIWSELLFFDRMLSMSLGRPFAISNDQTNVHEPSNVCDIQISSQSNCIPDPSYERTEAS 424
Query: 50 LVLFKS 33
+FK+
Sbjct: 425 FTIFKA 430
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -1
Query: 497 IYSRTLSKAACTSSGSGSPNCMLRILSVLVRILMAFSNTSAM 372
+YSR A SSG C+ R L R+L+ T+A+
Sbjct: 1350 LYSRVTEGGANLSSGQRQLMCLTRALLTPTRVLLLDEATAAV 1391
>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/41 (26%), Positives = 18/41 (43%)
Frame = +2
Query: 422 GFVAYSLGNHYQKTYRRLLTMSLNILTILIQQMTSIRWEGL 544
G +A S GNH Q T+ + ++ Q I+W +
Sbjct: 163 GVIACSAGNHAQGVAYSARTLGVKATIVMPQNTPEIKWRNV 203
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +1
Query: 352 LKSLTVNIAEVLLNAIRILTNTERI---RSIQFGEPLPEDVQAAFD 480
++++ ++I E+ + IRIL+ ER+ RSI G P V +D
Sbjct: 125 MRAIFLSIDEISMICIRILSAEERLKTGRSIDSGFPFSFPVHLIYD 170
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/40 (25%), Positives = 23/40 (57%)
Frame = +1
Query: 421 RIRSIQFGEPLPEDVQAAFDNVLEYIDDIDTANDFYKMGG 540
R+ +QFG PE++++ +E+ + +D + ++GG
Sbjct: 15 RVEEVQFGILSPEEIRSMSVAKIEFPETMDESGQRPRVGG 54
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,667,073
Number of Sequences: 5004
Number of extensions: 50867
Number of successful extensions: 157
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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