Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_C11
(746 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0495 + 34323082-34323173,34323600-34323742,34324265-343243... 54 1e-07
03_02_0515 - 9046450-9046996,9047125-9047227,9047319-9047540,904... 48 8e-06
09_04_0708 + 19648511-19648808,19649189-19649280,19650850-196510... 44 1e-04
10_08_0765 - 20421813-20423174,20423591-20423771,20423862-204241... 30 2.2
11_06_0703 + 26444128-26446215,26446525-26447226 28 9.1
07_01_0733 + 5570084-5570282,5570395-5570600,5572484-5572624,557... 28 9.1
02_03_0392 + 18485837-18485845,18486042-18486119,18486450-184865... 28 9.1
>03_06_0495 +
34323082-34323173,34323600-34323742,34324265-34324315,
34324405-34324626,34324731-34324833,34325156-34325552,
34326564-34326735,34326995-34327089,34327246-34327455
Length = 494
Score = 54.0 bits (124), Expect = 1e-07
Identities = 32/137 (23%), Positives = 70/137 (51%), Gaps = 3/137 (2%)
Frame = +1
Query: 244 KDFYGLQWKPQ-KLKMHQGNSELGP--IDDERRKFLEDALKSLTVNIAEVLLNAIRILTN 414
KD G W K + G+ P + +E +K+ +A+++ T+++ + + +++
Sbjct: 3 KDGGGPDWNGLLKWSLAHGDGTAKPRSLSEEDKKWFMEAMQANTMDVVKRMKEITQVMKT 62
Query: 415 TERIRSIQFGEPLPEDVQAAFDNVLEYIDDIDTANDFYKMGGFAMFPICYGSENEKVRAL 594
+ + +Q PE+++ D + E+++ ID AND + +GG + + +RA
Sbjct: 63 PDDV--LQSQGVTPENIEDMLDELQEHVESIDMANDLHSIGGLDPLLGYLKNSHAGIRAK 120
Query: 595 ASTVLAELCQNNPFCQE 645
A+ V++ + QNNP Q+
Sbjct: 121 AAEVVSTIVQNNPKSQQ 137
>03_02_0515 -
9046450-9046996,9047125-9047227,9047319-9047540,
9048350-9048400,9048966-9049168,9049276-9049361
Length = 403
Score = 48.0 bits (109), Expect = 8e-06
Identities = 27/109 (24%), Positives = 55/109 (50%)
Frame = +1
Query: 319 DDERRKFLEDALKSLTVNIAEVLLNAIRILTNTERIRSIQFGEPLPEDVQAAFDNVLEYI 498
++ERR E + + V++ + I +L +T + ++ P+D++ + ++
Sbjct: 49 EEERRWLAEAVERHMMVDVVS-RMREIALLMSTP-LSVLEAHGITPDDIEGLLAELQVHV 106
Query: 499 DDIDTANDFYKMGGFAMFPICYGSENEKVRALASTVLAELCQNNPFCQE 645
+ ID AND + +GG + N ++RA A+ V+ + QNNP Q+
Sbjct: 107 ESIDMANDLHSVGGLVPVIKYLRNSNARIRARAADVVTTVVQNNPTSQQ 155
>09_04_0708 +
19648511-19648808,19649189-19649280,19650850-19651000,
19651779-19651906,19652099-19652257,19652325-19652507,
19652978-19653178,19653269-19653289
Length = 410
Score = 44.0 bits (99), Expect = 1e-04
Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 9/163 (5%)
Frame = +1
Query: 187 RQEVKMKSYQISRGSQETCKDFY--GLQWKPQKLKMHQGNSELGPIDDER---RKFLEDA 351
+ E ++ S + SRG +D + G L+ GNS+ + ++ +K D
Sbjct: 62 KDEGELVSGEESRGGGSVVEDEFAGGFGSLDSMLQWAIGNSDPDKLKEQAEGVQKLSADE 121
Query: 352 LKSLTVNIAEVLLNAIRILTNTE----RIRSIQFGEPLPEDVQAAFDNVLEYIDDIDTAN 519
L + I E L+ +++ ++ + I + ED Q A +L ++ ID AN
Sbjct: 122 LLKRRMEIKE-LMEKLKMPSDADLMKIAIADLNNSSISLEDRQRALQELLILVEPIDNAN 180
Query: 520 DFYKMGGFAMFPICYGSENEKVRALASTVLAELCQNNPFCQEK 648
D K+GG + NE++R ++ VL + QNN Q +
Sbjct: 181 DLDKLGGLVAVIQDLNNANEEIRTTSAWVLGKASQNNALVQNQ 223
>10_08_0765 - 20421813-20423174,20423591-20423771,20423862-20424117,
20424768-20425095,20425218-20426156,20427015-20427761,
20428517-20428789
Length = 1361
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = -2
Query: 631 DYSDRAQPGPYW-RGRGPSRFRFHSILET*QTLPSYRSHLLYQYRQYIQGHCQKP 470
DYS A P YW G PSR + LE + P++ S + R Y + C P
Sbjct: 979 DYSQVAPPNQYWHNGNRPSRGSY-GYLEVFREHPNHHSGQDSRTRSYHETMCSTP 1032
>11_06_0703 + 26444128-26446215,26446525-26447226
Length = 929
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 677 RTFSRPYXKNFSWQNGLF*QSSARTVLARARTFSFSLP*HIGNI 546
RT+ Y K+ N LF + + VL T S+P HIGN+
Sbjct: 543 RTYRTSYSKSLRVYNPLFKRLTYLRVLDLTGTLVQSIPSHIGNL 586
>07_01_0733 + 5570084-5570282,5570395-5570600,5572484-5572624,
5572773-5572949,5573049-5573145,5573575-5573687,
5573774-5573896,5574004-5574075,5575340-5575432,
5575564-5575674,5575767-5575889,5576834-5576890,
5576939-5577022,5577140-5577214,5577418-5577554,
5577719-5577853,5579029-5579168,5579334-5579399,
5579732-5579838,5579910-5579990,5580064-5580138,
5580224-5580325,5581837-5582005,5582090-5582217,
5582596-5582679,5582779-5582879,5583729-5583882,
5583964-5584038,5584112-5584262,5584463-5585078,
5585427-5585487,5585874-5586019,5586104-5586287,
5586363-5586440,5586603-5586931,5587023-5587199,
5587571-5587667,5587742-5587897,5587962-5588198,
5588271-5588354,5588426-5588486,5588762-5588898
Length = 1912
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +1
Query: 322 DERRKFLEDALKSLTVNIAEVLLNAIRILTNTERIRSIQFGEPLPEDVQAAFDNVLEYID 501
D+ R E AL+++ + E LN N E ++G P + V+ F L+Y D
Sbjct: 1648 DKARAVAERALRTINIREEEEKLNVWVAYFNLEN----EYGSPREDAVKKIFQRALQYCD 1703
>02_03_0392 +
18485837-18485845,18486042-18486119,18486450-18486550,
18487000-18487087,18487753-18487897,18487968-18488050,
18488189-18488254,18488572-18488628,18489084-18489206,
18489645-18489696,18489830-18489944,18490018-18490147
Length = 348
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/40 (47%), Positives = 21/40 (52%)
Frame = +3
Query: 165 IAGALTYPTRSQDEVLPNQPRQPRNLQGLLRFAMEATKAE 284
IA A YP S LP+ R R + GLL FA A KAE
Sbjct: 128 IASAFHYPVYS----LPSVHRLDRLVSGLLIFAKNADKAE 163
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,818,893
Number of Sequences: 37544
Number of extensions: 314823
Number of successful extensions: 916
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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