Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_C11
         (746 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12894| Best HMM Match : FH2 (HMM E-Value=1.9)                       32   0.43 
SB_25234| Best HMM Match : SMC_hinge (HMM E-Value=3.7e-28)             30   1.7  
SB_54858| Best HMM Match : DUF668 (HMM E-Value=4.9)                    29   4.0  
SB_43382| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_4695| Best HMM Match : SAM_1 (HMM E-Value=0.012)                    28   7.0  

>SB_12894| Best HMM Match : FH2 (HMM E-Value=1.9)
          Length = 408

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 18/69 (26%), Positives = 31/69 (44%)
 Frame = +1

Query: 418 ERIRSIQFGEPLPEDVQAAFDNVLEYIDDIDTANDFYKMGGFAMFPICYGSENEKVRALA 597
           E ++ +   E   E ++ A D +  ++  ID A DF  +GG A+      S    + + A
Sbjct: 192 EHVQVLNSSESTMEQLEHALDELEYFVHQIDNAKDFDTIGGLAIVIKLMNSTESGLSSRA 251

Query: 598 STVLAELCQ 624
           + VL    Q
Sbjct: 252 AYVLGSAVQ 260


>SB_25234| Best HMM Match : SMC_hinge (HMM E-Value=3.7e-28)
          Length = 552

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 1/110 (0%)
 Frame = +1

Query: 202 MKSYQISRGSQETCK-DFYGLQWKPQKLKMHQGNSELGPIDDERRKFLEDALKSLTVNIA 378
           + SY   R  +E C       + +  +L   QG        + R  +++  +KSLT  +A
Sbjct: 113 LPSYNEYRAEEEQCTLRLSACEQRRTELYAKQGRKNQFSSKEARDNWIKKEMKSLTSTVA 172

Query: 379 EVLLNAIRILTNTERIRSIQFGEPLPEDVQAAFDNVLEYIDDIDTANDFY 528
           +       +   TER+RS +F + L  D++   D++ +    I+  N  Y
Sbjct: 173 KKESQIQALQQETERLRS-EF-QRLETDIKERTDDLEQRRSSIEQNNKEY 220


>SB_54858| Best HMM Match : DUF668 (HMM E-Value=4.9)
          Length = 173

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 370 SLSDSLVRLQGICVFHHQLVLI 305
           S+ D L RL G+C+FH   +++
Sbjct: 143 SMQDGLSRLSGMCIFHQPTIIV 164


>SB_43382| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 861

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/42 (33%), Positives = 28/42 (66%)
 Frame = +3

Query: 108 LTKYLSF*KMSSNNTQNNTIAGALTYPTRSQDEVLPNQPRQP 233
           +T++L+F K  +NN  ++++  A+TY +  +D+ L  +PR P
Sbjct: 2   ITRWLNFRKRRNNNCFSDSLDKAVTY-SSPKDDFLYARPRFP 42


>SB_4695| Best HMM Match : SAM_1 (HMM E-Value=0.012)
          Length = 1348

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = +1

Query: 304 ELGPIDDERRKFLEDALKSLTVNIAEVLLNAIRILTNTERIRSIQFGEPLP 456
           E+G +D   RK L +A+KSL V+   V  NA    + +E + S+   E +P
Sbjct: 708 EIGVLDMSNRKILLEAVKSLPVHPQLVDSNAQSFSSASEWLGSLCLDEYVP 758


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,965,188
Number of Sequences: 59808
Number of extensions: 377981
Number of successful extensions: 885
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)