Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_C11
         (746 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    29   0.20 

>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 28.7 bits (61), Expect = 0.20
 Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 2/110 (1%)
 Frame = +1

Query: 211 YQISRGSQETCKDFYGL-QWKPQKLKMHQGNSELGPIDDERRKFLEDALKSLTVNIAEVL 387
           Y+  R  +E C     L + K ++L   QG        +ER K+++  LKSL   I + +
Sbjct: 351 YEAMRRKEEECSRELNLKEQKRKELYAKQGRGSQFSSKEERDKWIQGELKSLNKQIKDKI 410

Query: 388 LNAIRILTNTERIRSIQFGEPLPEDVQAAFDNVLEYIDDIDTAN-DFYKM 534
            +  ++  + ++  + Q GE L + +Q   ++  +    ID  N +FY++
Sbjct: 411 SHQNKLQDDLKKDIAKQ-GE-LEKKIQEHTESFEQLRVQIDEHNKNFYEL 458


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 665,339
Number of Sequences: 2352
Number of extensions: 12482
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 76923555
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)