Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_C11
(746 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK024791-1|BAB15005.1| 248|Homo sapiens protein ( Homo sapiens ... 32 1.9
BC032595-1|AAH32595.1| 303|Homo sapiens mitochondrial ribosomal... 31 3.3
BC017765-1|AAH17765.1| 302|Homo sapiens Unknown (protein for IM... 31 3.3
BC015109-1|AAH15109.1| 303|Homo sapiens mitochondrial ribosomal... 31 3.3
BC014356-1|AAH14356.1| 303|Homo sapiens mitochondrial ribosomal... 31 3.3
AB049474-1|BAB40180.1| 303|Homo sapiens mitochondrial ribosomal... 31 3.3
CR457191-1|CAG33472.1| 303|Homo sapiens MRPL1 protein. 30 7.7
>AK024791-1|BAB15005.1| 248|Homo sapiens protein ( Homo sapiens
cDNA: FLJ21138 fis, clone CAS07525. ).
Length = 248
Score = 32.3 bits (70), Expect = 1.9
Identities = 22/93 (23%), Positives = 47/93 (50%)
Frame = +1
Query: 166 LPEL*LIRQEVKMKSYQISRGSQETCKDFYGLQWKPQKLKMHQGNSELGPIDDERRKFLE 345
+PEL +R+++ K ++SR S +D P+ L++ + E+ +D+ER FL+
Sbjct: 127 MPELNRLRKKLNKKYPKLSRNS--IGRDI------PKMLELFKNGHEI-KVDEERENFLQ 177
Query: 346 DALKSLTVNIAEVLLNAIRILTNTERIRSIQFG 444
+ +L ++ ++ N ++ R R + G
Sbjct: 178 TKIATLDMSSGQIAANLQAVINEVCRHRPLNLG 210
>BC032595-1|AAH32595.1| 303|Homo sapiens mitochondrial ribosomal
protein L1 protein.
Length = 303
Score = 31.5 bits (68), Expect = 3.3
Identities = 22/93 (23%), Positives = 47/93 (50%)
Frame = +1
Query: 166 LPEL*LIRQEVKMKSYQISRGSQETCKDFYGLQWKPQKLKMHQGNSELGPIDDERRKFLE 345
+PEL +R+++ K ++SR S +D P+ L++ + E+ +D+ER FL+
Sbjct: 182 MPELNRLRKKLNKKYPKLSRNS--IGRDI------PKMLELFKNGHEI-KVDEERENFLQ 232
Query: 346 DALKSLTVNIAEVLLNAIRILTNTERIRSIQFG 444
+ +L ++ ++ N ++ R R + G
Sbjct: 233 TKIATLDMSSDQIAANLQAVINEVCRHRPLNLG 265
>BC017765-1|AAH17765.1| 302|Homo sapiens Unknown (protein for
IMAGE:4284885) protein.
Length = 302
Score = 31.5 bits (68), Expect = 3.3
Identities = 22/93 (23%), Positives = 47/93 (50%)
Frame = +1
Query: 166 LPEL*LIRQEVKMKSYQISRGSQETCKDFYGLQWKPQKLKMHQGNSELGPIDDERRKFLE 345
+PEL +R+++ K ++SR S +D P+ L++ + E+ +D+ER FL+
Sbjct: 182 MPELNRLRKKLNKKYPKLSRNS--IGRDI------PKMLELFKNGHEI-KVDEERENFLQ 232
Query: 346 DALKSLTVNIAEVLLNAIRILTNTERIRSIQFG 444
+ +L ++ ++ N ++ R R + G
Sbjct: 233 TKIATLDMSSDQIAANLQAVINEVCRHRPLNLG 265
>BC015109-1|AAH15109.1| 303|Homo sapiens mitochondrial ribosomal
protein L1 protein.
Length = 303
Score = 31.5 bits (68), Expect = 3.3
Identities = 22/93 (23%), Positives = 47/93 (50%)
Frame = +1
Query: 166 LPEL*LIRQEVKMKSYQISRGSQETCKDFYGLQWKPQKLKMHQGNSELGPIDDERRKFLE 345
+PEL +R+++ K ++SR S +D P+ L++ + E+ +D+ER FL+
Sbjct: 182 MPELNRLRKKLNKKYPKLSRNS--IGRDI------PKMLELFKNGHEI-KVDEERENFLQ 232
Query: 346 DALKSLTVNIAEVLLNAIRILTNTERIRSIQFG 444
+ +L ++ ++ N ++ R R + G
Sbjct: 233 TKIATLDMSSDQIAANLQAVINEVCRHRPLNLG 265
>BC014356-1|AAH14356.1| 303|Homo sapiens mitochondrial ribosomal
protein L1 protein.
Length = 303
Score = 31.5 bits (68), Expect = 3.3
Identities = 22/93 (23%), Positives = 47/93 (50%)
Frame = +1
Query: 166 LPEL*LIRQEVKMKSYQISRGSQETCKDFYGLQWKPQKLKMHQGNSELGPIDDERRKFLE 345
+PEL +R+++ K ++SR S +D P+ L++ + E+ +D+ER FL+
Sbjct: 182 MPELNRLRKKLNKKYPKLSRNS--IGRDI------PKMLELFKNGHEI-KVDEERENFLQ 232
Query: 346 DALKSLTVNIAEVLLNAIRILTNTERIRSIQFG 444
+ +L ++ ++ N ++ R R + G
Sbjct: 233 TKIATLDMSSDQIAANLQAVINEVCRHRPLNLG 265
>AB049474-1|BAB40180.1| 303|Homo sapiens mitochondrial ribosomal
protein L1 (L1mt) protein.
Length = 303
Score = 31.5 bits (68), Expect = 3.3
Identities = 22/93 (23%), Positives = 47/93 (50%)
Frame = +1
Query: 166 LPEL*LIRQEVKMKSYQISRGSQETCKDFYGLQWKPQKLKMHQGNSELGPIDDERRKFLE 345
+PEL +R+++ K ++SR S +D P+ L++ + E+ +D+ER FL+
Sbjct: 182 MPELNRLRKKLNKKYPKLSRNS--IGRDI------PKMLELFKNGHEI-KVDEERENFLQ 232
Query: 346 DALKSLTVNIAEVLLNAIRILTNTERIRSIQFG 444
+ +L ++ ++ N ++ R R + G
Sbjct: 233 TKIATLDMSSDQIAANLQAVINEVCRHRPLNLG 265
>CR457191-1|CAG33472.1| 303|Homo sapiens MRPL1 protein.
Length = 303
Score = 30.3 bits (65), Expect = 7.7
Identities = 22/93 (23%), Positives = 47/93 (50%)
Frame = +1
Query: 166 LPEL*LIRQEVKMKSYQISRGSQETCKDFYGLQWKPQKLKMHQGNSELGPIDDERRKFLE 345
+PEL +R+++ K ++SR S G + P+ L++ + E+ +D+ER FL+
Sbjct: 182 MPELNRLRKKLNKKYPKLSRNS-------IG-RHIPKMLELFKNGHEI-KVDEERENFLQ 232
Query: 346 DALKSLTVNIAEVLLNAIRILTNTERIRSIQFG 444
+ +L ++ ++ N ++ R R + G
Sbjct: 233 TKIATLDMSSDQIAANLQAVINEVCRHRPLNLG 265
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,581,998
Number of Sequences: 237096
Number of extensions: 1824465
Number of successful extensions: 4124
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4121
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8959138240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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