Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_C11
         (746 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          25   0.75 
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    24   1.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.3  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
 Frame = -2

Query: 454 VVVPQTVCYESFQYW*EF*WR-SVTLQQCSLSDSL-----VRLQGIC 332
           +++PQ VC+   ++  EF +R  + + Q  L   L     ++++G+C
Sbjct: 75  IIMPQDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLC 121


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +1

Query: 487 LEYIDDIDTANDFYKMGGFAMFPICYGSENEKVRALASTVLAEL 618
           L Y  D+D +  F ++G   ++  C G      R L + + A L
Sbjct: 128 LSYDCDVDVSTFFDQLGQEVIYTACVGLLERAFRCLGNNLTAFL 171


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 523 SHLLYQYRQYIQGHCQKPPV 464
           SH LY+  + I+ +  KPP+
Sbjct: 147 SHTLYKLDEIIERNGDKPPL 166


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,389
Number of Sequences: 438
Number of extensions: 3287
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)