Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_C10
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces ...    81   1e-16
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    27   3.4  
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    26   5.9  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    25   7.9  

>SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 201

 Score = 81.0 bits (191), Expect = 1e-16
 Identities = 46/137 (33%), Positives = 71/137 (51%), Gaps = 4/137 (2%)
 Frame = +3

Query: 288 VVLNVYDMYW---TNWYTAGAGLGVFHSGVQVHGSEWAYGGHPY-AFTGVFEISPRDERE 455
           V +NVYD+      N      GLG++H+G+ + G E+A+G H     TGVF   PR   E
Sbjct: 3   VYINVYDLMPDSPVNKLAWTLGLGIYHTGLVLEGKEYAFGAHEIPGSTGVFATMPRPPLE 62

Query: 456 LGEQFRFRQSVHIGYTDFSEEEVRRLVAELGKQFRGDRYHLMNNNCNHFTSAFCMALCSR 635
                R+R S+ +      + +V R++  L ++F G  Y L+  NCNHFT+A  + L   
Sbjct: 63  ---GCRWRCSIALPNCTLPKPDVDRILIRLSQEFTGLSYSLLERNCNHFTNAAAIELTGS 119

Query: 636 DIPPWVNRLXYVSSCVP 686
            IP ++NR+  +    P
Sbjct: 120 PIPSFLNRISRIGLAFP 136


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -3

Query: 386 FRSVNLNTAVEHTQTRAR-SVPIRPIHIVNVEDHGRL 279
           F+ + +NTAVE   TR+R S+ + P     +++ GRL
Sbjct: 712 FKYLTINTAVEQAATRSRLSLDLAPESSRTLQNLGRL 748


>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 8/30 (26%), Positives = 20/30 (66%)
 Frame = +3

Query: 45  IISKLKKSFFLNHHXIXLFIHVLCSQWRLH 134
           +++++ K F ++ + + +F+H L S + LH
Sbjct: 215 VLTEVPKQFSVDKNQLKMFVHYLPSYYHLH 244


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -2

Query: 348 PDPRPQCTNSSNTYRKR*GPRSPVRAEGAGSLNGAIAATCKTGT 217
           PD    C N+   Y+K      PV++E    ++  I   CK GT
Sbjct: 27  PDNSLLC-NACGLYQKHRKHARPVKSEDLKDISPLIQQVCKNGT 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,837,373
Number of Sequences: 5004
Number of extensions: 59727
Number of successful extensions: 174
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)