Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_C06
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    29   0.55 
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    28   0.95 
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|...    27   2.9  
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom...    26   3.8  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    26   3.8  
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    26   5.1  
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    25   6.7  
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa...    25   6.7  
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha...    25   6.7  

>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 29.1 bits (62), Expect = 0.55
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +1

Query: 322 KENGCVQAMAWRPDGKALAIG-YNLGIIYTVSVEDKGIIDKY 444
           KENGC+  +A  PDG+ +    ++LGI+   SV    + +++
Sbjct: 117 KENGCIIFIAALPDGQIIVSSKHSLGIVEGQSVSHANVGERW 158


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
 Frame = -3

Query: 607 IHSTLELFVKILRHHHINYIQW--HF-ARCQFVSPI 509
           ++ST   FV++LR+H + Y +W  H+ A    +SP+
Sbjct: 832 LNSTYNEFVEVLRNHELPYSEWSAHYSALVNRISPV 867


>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 348

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 283 YVFGLHLYYYLMLANPDGYSRP*DQLDR 200
           YV GLH  YY    NP  Y +  D + R
Sbjct: 38  YVGGLHAIYYFPKLNPRNYHKFVDTISR 65


>SPBC947.12 |kms2||spindle pole body protein
           Kms2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 6/22 (27%), Positives = 17/22 (77%)
 Frame = -3

Query: 316 VVSSILFANAIYVFGLHLYYYL 251
           ++  +LF + +++ G+H++Y+L
Sbjct: 408 LILRVLFFSLLFIIGIHIFYFL 429


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 328 FLLEVVSSILFANAIYVFGLHLYYYLMLA 242
           +LL+ +S  L A   Y FGLHL+   M A
Sbjct: 61  YLLDSISKNLGAPYTYFFGLHLFSTFMSA 89


>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = +1

Query: 223 WSNRLDLLALSNNKGEVQIHRLHWQKVWSLPPPKENGCVQAMAWRPDGKALAIGYNLGII 402
           WS+    +A S  KG + I      +V    P      V A+AW+P    L+   N GI+
Sbjct: 238 WSSNGMYIAASFKKGGILIWDTQSHEVVVELP---YSTVVALAWQPFENVLSFTTNQGIL 294

Query: 403 YT 408
           Y+
Sbjct: 295 YS 296


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 281 IDCIGKKYGAYHLQKKMAVYKRWLGDLME 367
           ++ +GKKYGA  + +  +V   W  D M+
Sbjct: 54  VERLGKKYGAIKVVRPSSVLNPWNEDTMK 82


>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
           Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 337 VQAMAWRPDGKALAIGYNLGIIYTVSVE 420
           V ++ W   G  LA+G + G+IY   +E
Sbjct: 169 VTSVLWTGKGTQLAVGTDSGVIYIWDIE 196


>SPBC32H8.09 |||WD repeat protein, human WDR8
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 592 ELFVKILRHHHINYIQWHFARCQFV 518
           +L   +++ HHI Y +WH  R   V
Sbjct: 353 KLHTVLIQKHHIVYFEWHPGRPDLV 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,375,203
Number of Sequences: 5004
Number of extensions: 45857
Number of successful extensions: 127
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)