Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_C06
(624 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0997 + 33382756-33382861,33383070-33383161,33383936-333841... 60 1e-09
03_02_0400 - 8135283-8135490,8136047-8136213,8136289-8136477,813... 31 0.56
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865... 31 0.74
10_08_0704 - 20018477-20018542,20018693-20018704,20018731-200189... 29 3.0
08_01_0751 + 7095707-7095846,7095944-7096009,7096236-7096296 29 3.0
08_01_0739 + 6798592-6798731,6798829-6798894,6799121-6799181 29 3.0
07_03_1692 - 28733184-28733980,28734306-28734373,28734481-287345... 29 4.0
04_04_0815 - 28269918-28270022,28270164-28270226,28270342-282704... 29 4.0
11_06_0627 + 25633537-25633884,25635246-25635869 28 5.2
07_03_0906 + 22481456-22481802,22482105-22482186,22482299-224824... 28 5.2
06_01_0993 + 7710016-7710977,7711081-7711316,7711422-7711501,771... 28 6.9
02_05_0420 + 28821717-28821854,28821944-28822210,28822299-288225... 28 6.9
>02_05_0997 +
33382756-33382861,33383070-33383161,33383936-33384175,
33384820-33384900,33384974-33385113,33385462-33385622,
33385700-33385800,33385895-33385969,33386218-33386488,
33386657-33386697,33386922-33387004,33387100-33387189,
33387721-33387825,33388023-33388161,33388467-33388670,
33388837-33388908,33389189-33389273,33389374-33389480
Length = 730
Score = 60.5 bits (140), Expect = 1e-09
Identities = 24/66 (36%), Positives = 41/66 (62%)
Frame = +1
Query: 223 WSNRLDLLALSNNKGEVQIHRLHWQKVWSLPPPKENGCVQAMAWRPDGKALAIGYNLGII 402
W+ DLLA+ + +V +HR +WQ++W++ P K C+ ++ W PDGK +A+G G++
Sbjct: 4 WNPEKDLLAMVTDDSKVVLHRFNWQRLWTISPGK---CITSICWSPDGKIVALGTEDGLV 60
Query: 403 YTVSVE 420
VE
Sbjct: 61 LLHDVE 66
>03_02_0400 - 8135283-8135490,8136047-8136213,8136289-8136477,
8136560-8136655,8136746-8136874,8136947-8137123,
8137256-8137366,8138592-8138792,8139022-8139186,
8139293-8139527,8139618-8139745,8139833-8139928,
8140017-8140112,8140252-8140325,8140393-8140462,
8140556-8140665,8140753-8140906,8141040-8141155,
8141259-8141379,8141464-8141641,8142331-8142489,
8142619-8142732,8142821-8143000,8143098-8143177
Length = 1117
Score = 31.5 bits (68), Expect = 0.56
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +1
Query: 202 YQVDLMVWSNRLDLLALSNNKGEVQI-HRLHWQKVWSLPPPKENGCVQAMAWRPDG 366
Y V + + + AL G V + L ++ W PPP ENG A++ P+G
Sbjct: 1053 YPVVVAAHPSEANQFALGLTDGGVYVLEPLESERKWGNPPPAENGSTSALSTPPNG 1108
>04_04_1035 + 30283456-30283536,30284823-30285359,30285508-30286512,
30286718-30287042,30287563-30287818,30287901-30288117,
30288743-30289095,30289330-30289833,30291267-30292467,
30292614-30292970,30293258-30293495,30294083-30295125,
30295234-30296649,30296731-30296855,30297036-30297314,
30297352-30297382,30298957-30299022,30299447-30299689,
30299848-30299898,30299980-30300071,30300182-30300249,
30300515-30300600,30300720-30300824,30300994-30301127,
30302403-30302436,30302620-30302892,30303019-30303288,
30303384-30303974,30304065-30304214
Length = 3376
Score = 31.1 bits (67), Expect = 0.74
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +1
Query: 322 KENGCVQAMAWRPDGKALAIGYN 390
++NG V +++W PDG+ +A+G N
Sbjct: 3094 EDNGPVTSVSWAPDGRHIAVGLN 3116
>10_08_0704 -
20018477-20018542,20018693-20018704,20018731-20018927,
20018928-20018999,20019159-20021289
Length = 825
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +3
Query: 270 SPNT*IALAKSMELTTSKRKWLCTSDGLET*WKGSSYWIQ 389
+PNT ++ +++E + S WL SDG++T WKG + +
Sbjct: 661 NPNT-LSAQETLEWS-SYINWLLYSDGIDTIWKGQEQFFE 698
>08_01_0751 + 7095707-7095846,7095944-7096009,7096236-7096296
Length = 88
Score = 29.1 bits (62), Expect = 3.0
Identities = 9/30 (30%), Positives = 15/30 (50%)
Frame = +1
Query: 292 WQKVWSLPPPKENGCVQAMAWRPDGKALAI 381
W W+ P + G + +WRP G+ L +
Sbjct: 43 WTTAWAKPAMERPGWISRQSWRPGGQRLRL 72
>08_01_0739 + 6798592-6798731,6798829-6798894,6799121-6799181
Length = 88
Score = 29.1 bits (62), Expect = 3.0
Identities = 9/30 (30%), Positives = 15/30 (50%)
Frame = +1
Query: 292 WQKVWSLPPPKENGCVQAMAWRPDGKALAI 381
W W+ P + G + +WRP G+ L +
Sbjct: 43 WTTAWAKPAMERPGWISRQSWRPGGQRLRL 72
>07_03_1692 -
28733184-28733980,28734306-28734373,28734481-28734594,
28734835-28734884,28735012-28735422,28735534-28735610,
28736083-28736257,28736843-28736939,28737070-28737833,
28737900-28738001,28738093-28738174,28739004-28739161
Length = 964
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 359 GLQAIACTQPFSFGGGKLHTFCQCNLCI 276
G I C QP S G K + C CN+C+
Sbjct: 754 GCTCIVCIQPPSGKGPKHNPACTCNVCM 781
>04_04_0815 -
28269918-28270022,28270164-28270226,28270342-28270460,
28270586-28270684,28270761-28270953,28271024-28271117,
28271339-28271394,28272372-28272431,28272877-28272989,
28273286-28273343,28273429-28273521,28273659-28273904,
28274990-28275371,28275523-28275595,28275692-28275795,
28275872-28275963,28275996-28276106,28276225-28276309,
28276385-28276518,28278264-28278302
Length = 772
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 322 KENGCVQAMAWRPDGKALAIGYNLGIIYTVSVEDKGII 435
K G V +++ + K +A+G GI+ VS+ED I+
Sbjct: 485 KLKGAVTSISLISNSKRVAVGTEKGIVSVVSIEDASIL 522
>11_06_0627 + 25633537-25633884,25635246-25635869
Length = 323
Score = 28.3 bits (60), Expect = 5.2
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 11/65 (16%)
Frame = +1
Query: 241 LLALSNNKGEVQIHRLH-WQKVWSLPPPKENGC----------VQAMAWRPDGKALAIGY 387
L A G V++ W+ + SL P+ G V ++AW PDGK LA G
Sbjct: 120 LAAAGGGSGSVKLWDTEKWKPITSLAVPRPEGARPDKTGSGKFVLSVAWSPDGKLLACGS 179
Query: 388 NLGII 402
G I
Sbjct: 180 MDGTI 184
>07_03_0906 +
22481456-22481802,22482105-22482186,22482299-22482400,
22483005-22483315,22483948-22484044,22484522-22484696,
22485074-22485150,22485632-22486027,22486254-22486303,
22487315-22487382,22488142-22488701
Length = 754
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -2
Query: 359 GLQAIACTQPFSFGGGKLHTFCQCNLCI 276
G I C QP S G K C CN+C+
Sbjct: 618 GCSCIVCIQPPSGKGPKHKQTCTCNVCM 645
>06_01_0993 +
7710016-7710977,7711081-7711316,7711422-7711501,
7711977-7712072,7712995-7713892,7713983-7714093,
7714657-7714751
Length = 825
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 268 EVQIHRLHWQKVWSLPPPKE 327
E+Q + LH + +W PPPKE
Sbjct: 397 EIQDYLLHLKGLWLCPPPKE 416
>02_05_0420 +
28821717-28821854,28821944-28822210,28822299-28822568,
28822656-28823246,28823336-28823479
Length = 469
Score = 27.9 bits (59), Expect = 6.9
Identities = 8/23 (34%), Positives = 18/23 (78%)
Frame = +1
Query: 322 KENGCVQAMAWRPDGKALAIGYN 390
+++G + +++W PDG+ +A+G N
Sbjct: 189 EDSGPITSVSWAPDGQHVAVGLN 211
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,288,769
Number of Sequences: 37544
Number of extensions: 292573
Number of successful extensions: 672
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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