Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_C06
         (624 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31759| Best HMM Match : WD40 (HMM E-Value=0.59)                     66   3e-11
SB_19058| Best HMM Match : WD40 (HMM E-Value=0.59)                     66   3e-11
SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0)              31   1.0  
SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_56060| Best HMM Match : CPSase_L_D2 (HMM E-Value=0)                 28   5.4  
SB_34105| Best HMM Match : Extensin_2 (HMM E-Value=4.8)                28   7.1  

>SB_31759| Best HMM Match : WD40 (HMM E-Value=0.59)
          Length = 752

 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 29/75 (38%), Positives = 45/75 (60%)
 Frame = +1

Query: 217 MVWSNRLDLLALSNNKGEVQIHRLHWQKVWSLPPPKENGCVQAMAWRPDGKALAIGYNLG 396
           M WS ++DLLA+   +G+V ++RL WQ+VW++    E      +AWRPDG  L +GY  G
Sbjct: 23  MKWSPKMDLLAVITAEGDVWLNRLSWQQVWAVSAGNEKAV--CLAWRPDGNLLCVGYESG 80

Query: 397 IIYTVSVEDKGIIDK 441
            I +  +E+   + K
Sbjct: 81  EIKSFDIENAECVHK 95


>SB_19058| Best HMM Match : WD40 (HMM E-Value=0.59)
          Length = 752

 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 29/75 (38%), Positives = 45/75 (60%)
 Frame = +1

Query: 217 MVWSNRLDLLALSNNKGEVQIHRLHWQKVWSLPPPKENGCVQAMAWRPDGKALAIGYNLG 396
           M WS ++DLLA+   +G+V ++RL WQ+VW++    E      +AWRPDG  L +GY  G
Sbjct: 23  MKWSPKMDLLAVITAEGDVWLNRLSWQQVWAVSAGNEKAV--CLAWRPDGNLLCVGYESG 80

Query: 397 IIYTVSVEDKGIIDK 441
            I +  +E+   + K
Sbjct: 81  EIKSFDIENAECVHK 95


>SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0)
          Length = 2007

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 18/70 (25%), Positives = 33/70 (47%)
 Frame = +1

Query: 235  LDLLALSNNKGEVQIHRLHWQKVWSLPPPKENGCVQAMAWRPDGKALAIGYNLGIIYTVS 414
            +  + ++ N   VQ  +    KV+ LP   +       + RPDG  LA G    +   + 
Sbjct: 802  IQTVVVNPNIATVQTTKGLSDKVYFLPITADYVTQVIHSERPDGILLAFGGQTALNCGIE 861

Query: 415  VEDKGIIDKY 444
            + D+G++D+Y
Sbjct: 862  LRDRGVLDEY 871


>SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4538

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +1

Query: 505  IVWAIRTDILQSATEYNLYDDASIFLQKVPMSS 603
            +V AI+TD  ++  E++L DDA     +VP+S+
Sbjct: 921  VVIAIKTDAFKTVREFSLSDDARFEELEVPISN 953


>SB_56060| Best HMM Match : CPSase_L_D2 (HMM E-Value=0)
          Length = 1006

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 355 RPDGKALAIGYNLGIIYTVSVEDKGIIDKY 444
           RPDG  L++G    +   V + DKGI  KY
Sbjct: 464 RPDGVLLSMGGQTALNCGVDLYDKGIFQKY 493


>SB_34105| Best HMM Match : Extensin_2 (HMM E-Value=4.8)
          Length = 623

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
 Frame = -3

Query: 460 LLVPIHTYQLYPC---LPH*LYK*FLNCIQ*LEPFHQVSKPSLVHSHFLLEVVSSILFAN 290
           + VP+  YQ Y     +P  LY+ +   I      HQV+ P L+H ++  +   + + A 
Sbjct: 55  ITVPVLLYQYYCTSITVPVLLYQYYCTSITVPVLLHQVTAPVLLHQYYCNQYYCTSITAP 114

Query: 289 AIYVFGLHLYYYLMLANP 236
            +    LH YY   +  P
Sbjct: 115 VL----LHQYYCTSITAP 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,769,578
Number of Sequences: 59808
Number of extensions: 344414
Number of successful extensions: 735
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)