Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_C06
         (624 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22178-3|CAA80159.3| 1027|Caenorhabditis elegans Hypothetical pr...    47   1e-05
AF192400-1|AAF24233.1| 1027|Caenorhabditis elegans emb-30 protei...    47   1e-05
AJ011523-1|CAB38019.1|  760|Caenorhabditis elegans CHE-2 protein...    40   0.002
AC006635-2|AAK68383.1|  760|Caenorhabditis elegans Abnormal chem...    40   0.002
AC025723-4|AAK29933.2| 1335|Caenorhabditis elegans Rab connectin...    31   0.67 
Z72502-4|CAA96589.1|  750|Caenorhabditis elegans Hypothetical pr...    29   2.0  

>Z22178-3|CAA80159.3| 1027|Caenorhabditis elegans Hypothetical
           protein F54C8.3 protein.
          Length = 1027

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 9/83 (10%)
 Frame = +1

Query: 199 PYQVDLMVWSNRLDLLALSNNKGEVQIHRLHWQKVWSL---------PPPKENGCVQAMA 351
           P++V  M +S++ DL+AL +  GE+ + R  W+ +W              K +  V A+ 
Sbjct: 20  PFKVSSMCFSSQNDLIALGSKTGEILLKRTSWKMIWKTNINMIQAVGTECKLDSSVSALH 79

Query: 352 WRPDGKALAIGYNLGIIYTVSVE 420
           + PDG+ LA   + GII+ + VE
Sbjct: 80  FSPDGRFLAAATSKGIIHLLDVE 102


>AF192400-1|AAF24233.1| 1027|Caenorhabditis elegans emb-30 protein
           protein.
          Length = 1027

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 9/83 (10%)
 Frame = +1

Query: 199 PYQVDLMVWSNRLDLLALSNNKGEVQIHRLHWQKVWSL---------PPPKENGCVQAMA 351
           P++V  M +S++ DL+AL +  GE+ + R  W+ +W              K +  V A+ 
Sbjct: 20  PFKVSSMCFSSQNDLIALGSKTGEILLKRTSWKMIWKTNINMIQAVGTECKLDSSVSALH 79

Query: 352 WRPDGKALAIGYNLGIIYTVSVE 420
           + PDG+ LA   + GII+ + VE
Sbjct: 80  FSPDGRFLAAATSKGIIHLLDVE 102


>AJ011523-1|CAB38019.1|  760|Caenorhabditis elegans CHE-2 protein
           protein.
          Length = 760

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
 Frame = +1

Query: 202 YQVDLMVWSNRLDLLALSNNKGEVQIHRLHWQKVWSLPPPKEN-GCVQAMAWRPDGKALA 378
           Y +  + W+    L A+    G   I RL  +  WS    K N G V A++W PDG  LA
Sbjct: 228 YPITSISWNTDGTLFAV----GSHNILRLCDKSGWSHSLEKMNAGSVMALSWSPDGTQLA 283

Query: 379 IGYNLGIIYTVSVEDK 426
           +G   G+++   + DK
Sbjct: 284 VGTAAGLVFHAHIIDK 299


>AC006635-2|AAK68383.1|  760|Caenorhabditis elegans Abnormal
           chemotaxis protein 2 protein.
          Length = 760

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
 Frame = +1

Query: 202 YQVDLMVWSNRLDLLALSNNKGEVQIHRLHWQKVWSLPPPKEN-GCVQAMAWRPDGKALA 378
           Y +  + W+    L A+    G   I RL  +  WS    K N G V A++W PDG  LA
Sbjct: 228 YPITSISWNTDGTLFAV----GSHNILRLCDKSGWSHSLEKMNAGSVMALSWSPDGTQLA 283

Query: 379 IGYNLGIIYTVSVEDK 426
           +G   G+++   + DK
Sbjct: 284 VGTAAGLVFHAHIIDK 299


>AC025723-4|AAK29933.2| 1335|Caenorhabditis elegans Rab connectin
            related protein 2 protein.
          Length = 1335

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 23/80 (28%), Positives = 35/80 (43%)
 Frame = +1

Query: 139  CXLTTSKMHCGMRQVGXRHVPYQVDLMVWSNRLDLLALSNNKGEVQIHRLHWQKVWSLPP 318
            C   T   H  M +V    V +  +++ + +    +A     G   +H L   K  SLP 
Sbjct: 1186 CLDITILKHKSMSEVFPPIVKF--NMVAYCSTSKRVAFGGKNGTCVVHELRATKTHSLP- 1242

Query: 319  PKENGCVQAMAWRPDGKALA 378
               NG + A+A+  DGK LA
Sbjct: 1243 -SHNGPIAAVAFSEDGKYLA 1261


>Z72502-4|CAA96589.1|  750|Caenorhabditis elegans Hypothetical
           protein C08B6.7 protein.
          Length = 750

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/65 (23%), Positives = 34/65 (52%)
 Frame = +1

Query: 241 LLALSNNKGEVQIHRLHWQKVWSLPPPKENGCVQAMAWRPDGKALAIGYNLGIIYTVSVE 420
           ++A  ++ G ++I   H Q++ ++      G +  ++W PD K +A G    ++   SV 
Sbjct: 319 MMATVSHDGFLRIFNYHAQELLAVMKSYFGGLL-TLSWSPDAKLIATGGEDDLLTVYSVA 377

Query: 421 DKGII 435
           +K ++
Sbjct: 378 EKRVV 382


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,167,390
Number of Sequences: 27780
Number of extensions: 258518
Number of successful extensions: 608
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)