Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_C06
         (624 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.60 
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   2.4  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              22   5.6  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    22   5.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   7.4  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    21   9.8  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              21   9.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 337 VQAMAWRPDGKALAIGYNLGIIYTVSVEDKGI 432
           ++ ++W  DGK L +   +  I +V  EDKG+
Sbjct: 336 IKTVSWLKDGKPLGLEEAVLRIESVKKEDKGM 367



 Score = 24.2 bits (50), Expect = 1.0
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +1

Query: 505  IVWAIRTDILQSATEYNLYDDASIFLQKV 591
            + W +R  +LQS+       + S+F+++V
Sbjct: 1308 VTWKVRGAVLQSSDRLRQLPEGSLFIKEV 1336



 Score = 21.0 bits (42), Expect = 9.8
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +2

Query: 437  ISMNWN*KSQMNLILLSIAAFLVLYGRYELTSCKVPLN 550
            I ++W   SQ N ++     +       E TS KVP N
Sbjct: 1196 ILVSWRPPSQPNGVITQYTVYTKADNAEEPTSQKVPPN 1233


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -3

Query: 604 HSTLELFVKILRHHHINYIQW-HFARCQF-VSPIQYK 500
           H T  L+   +  H++NY+    F + +F  + IQY+
Sbjct: 257 HKTQNLYYSAMSSHNLNYVNTKQFTQGKFQANDIQYQ 293


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +1

Query: 196 VPYQVDLMVWSNRLDLL 246
           VPY  + +++S R+D+L
Sbjct: 143 VPYITNFIIYSKRMDVL 159


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = +2

Query: 506 LYGRYELTSCKVPLNIIYMMMPQYFYKKFQCRVDTK 613
           +Y R +   C++   +   M P+    ++QC V  K
Sbjct: 30  MYMRRKCQECRLKKCLTVGMRPECMVPEYQCAVKRK 65


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = +2

Query: 506 LYGRYELTSCKVPLNIIYMMMPQYFYKKFQCRVDTK 613
           +Y R +   C++   +   M P+    ++QC V  K
Sbjct: 233 MYMRRKCQECRLKKCLTVGMRPECVVPEYQCAVKRK 268


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 380 IARAFPSGLQAIAC 339
           +A A  SGL+ IAC
Sbjct: 112 VAHALESGLKVIAC 125


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +1

Query: 136 TCXLTTSKMHCGMR 177
           TC + +  +HCG R
Sbjct: 12  TCLICSPSVHCGTR 25


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,213
Number of Sequences: 438
Number of extensions: 3529
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)