Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_C05
(624 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g78900.1 68414.m09198 vacuolar ATP synthase catalytic subunit... 233 9e-62
At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putati... 52 3e-07
At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putati... 52 3e-07
At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATP... 50 9e-07
At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putati... 50 9e-07
At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putati... 50 9e-07
At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria... 40 0.002
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,... 40 0.002
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria... 40 0.002
At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to ... 28 0.17
At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to ... 28 0.17
At5g38340.1 68418.m04627 disease resistance protein (TIR-NBS-LRR... 30 1.4
At4g21240.1 68417.m03071 F-box family protein contains F-box dom... 30 1.4
At2g39730.3 68415.m04879 ribulose bisphosphate carboxylase/oxyge... 29 1.9
At2g39730.2 68415.m04878 ribulose bisphosphate carboxylase/oxyge... 29 1.9
At2g39730.1 68415.m04877 ribulose bisphosphate carboxylase/oxyge... 29 1.9
At1g55390.1 68414.m06335 DC1 domain-containing protein similar t... 29 3.3
At1g17970.1 68414.m02223 zinc finger (C3HC4-type RING finger) fa... 28 4.4
At3g01040.1 68416.m00005 glycosyl transferase family 8 protein c... 27 7.7
At2g41820.1 68415.m05168 leucine-rich repeat transmembrane prote... 27 7.7
>At1g78900.1 68414.m09198 vacuolar ATP synthase catalytic subunit A
/ V-ATPase A subunit / vacuolar proton pump alpha
subunit / V-ATPase 69 kDa subunit identical to SP|O23654
Vacuolar ATP synthase catalytic subunit A (EC 3.6.3.14)
(V-ATPase A subunit) (Vacuolar proton pump alpha
subunit) (V-ATPase 69 kDa subunit) {Arabidopsis
thaliana}
Length = 623
Score = 233 bits (569), Expect = 9e-62
Identities = 110/181 (60%), Positives = 134/181 (74%)
Frame = +1
Query: 79 GGLRXLANXXHXERFGYVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIRLEGDMAT 258
G L + +GYV VSGPVV A+ M+G+AMYELVRVG++ L+GEIIRLEGD AT
Sbjct: 7 GKLTTFEDDEKESEYGYVRKVSGPVVVADGMAGAAMYELVRVGHDNLIGEIIRLEGDSAT 66
Query: 259 IQVYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGIN 438
IQVYEET+G+TV DPVLRT KPLSVELGPGILG+IFDGIQRPLK I ++ +YIP+G++
Sbjct: 67 IQVYEETAGLTVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIARISGDVYIPRGVS 126
Query: 439 VPSLAREVDWEFNPLNVKVGSHITGGDLYGIVHXNTLVKHRMLVPPKAKGTVTYIXPAGN 618
VP+L ++ WEF P G ITGGDLY V NTL+ H + +PP A G +TYI PAG
Sbjct: 127 VPALDKDCLWEFQPNKFVEGDTITGGDLYATVFENTLMNHLVALPPDAMGKITYIAPAGQ 186
Query: 619 Y 621
Y
Sbjct: 187 Y 187
>At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 52.0 bits (119), Expect = 3e-07
Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Frame = +1
Query: 130 VFAVSGPVVTAEKMSGSAMYELVRVGYNELV---GEIIRLEGDMATIQVYEETSGV-TVG 297
V V+GP+V EK+ G E+V + + G+++ ++G+ A +QV+E TSG+
Sbjct: 23 VSGVAGPLVILEKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKY 82
Query: 298 DPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYI 423
V TG+ L + +LG IF+G +P+ + + Y+
Sbjct: 83 TTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYL 124
>At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 52.0 bits (119), Expect = 3e-07
Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Frame = +1
Query: 130 VFAVSGPVVTAEKMSGSAMYELVRVGYNELV---GEIIRLEGDMATIQVYEETSGV-TVG 297
V V+GP+V EK+ G E+V + + G+++ ++G+ A +QV+E TSG+
Sbjct: 23 VSGVAGPLVILEKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKY 82
Query: 298 DPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYI 423
V TG+ L + +LG IF+G +P+ + + Y+
Sbjct: 83 TTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYL 124
>At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATPase
B subunit / vacuolar proton pump B subunit / V-ATPase 57
kDa subunit identical to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}
Length = 486
Score = 50.4 bits (115), Expect = 9e-07
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Frame = +1
Query: 130 VFAVSGPVVTAEKMSGSAMYELVRVGYNE---LVGEIIRLEGDMATIQVYEETSGV-TVG 297
V V+GP+V +K+ G E+V + + G+++ ++G+ A +QV+E TSG+
Sbjct: 22 VSGVAGPLVILDKVKGPKYQEIVNIRLGDGSTRRGQVLEVDGEKAVVQVFEGTSGIDNKF 81
Query: 298 DPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYI 423
V TG+ L + +LG IF+G +P+ + + Y+
Sbjct: 82 TTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYL 123
>At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 485
Score = 50.4 bits (115), Expect = 9e-07
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Frame = +1
Query: 130 VFAVSGPVVTAEKMSGSAMYELVRVGYNE---LVGEIIRLEGDMATIQVYEETSGV-TVG 297
V V+GP+V +K+ G E+V + + G+++ ++G+ A +QV+E TSG+
Sbjct: 22 VSGVAGPLVILDKVKGPKYQEIVNIRLGDGSTRRGQVLEVDGEKAVVQVFEGTSGIDNKF 81
Query: 298 DPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYI 423
V TG+ L + +LG IF+G +P+ + + Y+
Sbjct: 82 TTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYL 123
>At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 330
Score = 50.4 bits (115), Expect = 9e-07
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Frame = +1
Query: 130 VFAVSGPVVTAEKMSGSAMYELVRVGYNE---LVGEIIRLEGDMATIQVYEETSGV-TVG 297
V V+GP+V +K+ G E+V + + G+++ ++G+ A +QV+E TSG+
Sbjct: 22 VSGVAGPLVILDKVKGPKYQEIVNIRLGDGSTRRGQVLEVDGEKAVVQVFEGTSGIDNKF 81
Query: 298 DPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYI 423
V TG+ L + +LG IF+G +P+ + + Y+
Sbjct: 82 TTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYL 123
>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
identical to SP|P83484 ATP synthase beta chain 2,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452187|dbj|AK118582.1|
Length = 556
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +1
Query: 277 TSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGINVPSL 450
T G+ G VL TG P++V +G LG I + + P+ + E+ Y+P + P+L
Sbjct: 141 TEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPAL 198
>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
putative strong similarity to SP|P83483 ATP synthase
beta chain 1, mitochondrial precursor (EC 3.6.3.14)
{Arabidopsis thaliana}, SP|P17614 ATP synthase beta
chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
plumbaginifolia}; contains Pfam profiles PF00006: ATP
synthase alpha/beta family nucleotide-binding domain,
PF00306: ATP synthase ab C terminal, PF02874: ATP
synthase alpha/beta family beta-barrel domain
Length = 559
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +1
Query: 277 TSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGINVPSL 450
T G+ G VL TG P++V +G LG I + + P+ + E+ Y+P + P+L
Sbjct: 144 TEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPAL 201
>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
identical to SP|P83483 ATP synthase beta chain 1,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452102|dbj|AK118538.1|
Length = 556
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +1
Query: 277 TSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGINVPSL 450
T G+ G VL TG P++V +G LG I + + P+ + E+ Y+P + P+L
Sbjct: 141 TEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPAL 198
>At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to
nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
cDNA provides a truncated ORF likely due to a skipped
exon. An alternative ORF is provided.
Length = 661
Score = 28.3 bits (60), Expect(2) = 0.17
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -2
Query: 371 PSKMEPKIPGPSSTDKG-FPVRSTGSPTVTPEVSSYTWM 258
P + P P PSS FPV + SPT+ P SSY M
Sbjct: 204 PLPVSPPPPLPSSHPSSLFPVTTNSSPTIPPS-SSYPQM 241
Score = 23.4 bits (48), Expect(2) = 0.17
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 146 PDTAKTYPNRSXXXXLASXLKPPLRA 69
P +A+ P RS ++ LKPP R+
Sbjct: 246 PSSAQLAPTRSKVIDVSHLLKPPHRS 271
>At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to
nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
cDNA provides a truncated ORF likely due to a skipped
exon. An alternative ORF is provided.
Length = 383
Score = 28.3 bits (60), Expect(2) = 0.17
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -2
Query: 371 PSKMEPKIPGPSSTDKG-FPVRSTGSPTVTPEVSSYTWM 258
P + P P PSS FPV + SPT+ P SSY M
Sbjct: 204 PLPVSPPPPLPSSHPSSLFPVTTNSSPTIPPS-SSYPQM 241
Score = 23.4 bits (48), Expect(2) = 0.17
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 146 PDTAKTYPNRSXXXXLASXLKPPLRA 69
P +A+ P RS ++ LKPP R+
Sbjct: 246 PSSAQLAPTRSKVIDVSHLLKPPHRS 271
>At5g38340.1 68418.m04627 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1059
Score = 29.9 bits (64), Expect = 1.4
Identities = 9/34 (26%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = +1
Query: 385 LKDINELTQSIYIPKGIN-VPSLAREVDWEFNPL 483
L+ + + ++ +Y+P+G+N +P R ++W++ P+
Sbjct: 613 LRVLRDRSEKLYLPQGLNYLPKKLRLIEWDYFPM 646
>At4g21240.1 68417.m03071 F-box family protein contains F-box domain
Pfam:PF00646
Length = 417
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 472 FNPLNVKVGSHITGGDLYGIVHXNTLVKHRMLVP-PKAKGTVTY 600
+NP + V + GD Y IV N ++ + +P PK TV Y
Sbjct: 125 YNPSSESVNGLVCFGDFYNIVVWNPSMRQHVTLPEPKPHSTVRY 168
>At2g39730.3 68415.m04879 ribulose bisphosphate
carboxylase/oxygenase activase / RuBisCO activase
identical to SWISS-PROT:P10896 ribulose bisphosphate
carboxylase/oxygenase activase, chloroplast precursor
(RuBisCO activase, RA)[Arabidopsis thaliana]
Length = 441
Score = 29.5 bits (63), Expect = 1.9
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = -1
Query: 243 FKTDNLTDEFIVTDTDQLVHSRSGHFFGSDDGSRYGEDIS---EPLXMXXIGER 91
F+TD + DE IVT DQ +S FFG+ Y +++ E L + IG+R
Sbjct: 320 FRTDKIKDEDIVTLVDQF-PGQSIDFFGALRARVYDDEVRKFVESLGVEKIGKR 372
>At2g39730.2 68415.m04878 ribulose bisphosphate
carboxylase/oxygenase activase / RuBisCO activase
identical to SWISS-PROT:P10896 ribulose bisphosphate
carboxylase/oxygenase activase, chloroplast precursor
(RuBisCO activase, RA)[Arabidopsis thaliana]
Length = 446
Score = 29.5 bits (63), Expect = 1.9
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = -1
Query: 243 FKTDNLTDEFIVTDTDQLVHSRSGHFFGSDDGSRYGEDIS---EPLXMXXIGER 91
F+TD + DE IVT DQ +S FFG+ Y +++ E L + IG+R
Sbjct: 320 FRTDKIKDEDIVTLVDQF-PGQSIDFFGALRARVYDDEVRKFVESLGVEKIGKR 372
>At2g39730.1 68415.m04877 ribulose bisphosphate
carboxylase/oxygenase activase / RuBisCO activase
identical to SWISS-PROT:P10896 ribulose bisphosphate
carboxylase/oxygenase activase, chloroplast precursor
(RuBisCO activase, RA)[Arabidopsis thaliana]
Length = 474
Score = 29.5 bits (63), Expect = 1.9
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = -1
Query: 243 FKTDNLTDEFIVTDTDQLVHSRSGHFFGSDDGSRYGEDIS---EPLXMXXIGER 91
F+TD + DE IVT DQ +S FFG+ Y +++ E L + IG+R
Sbjct: 320 FRTDKIKDEDIVTLVDQF-PGQSIDFFGALRARVYDDEVRKFVESLGVEKIGKR 372
>At1g55390.1 68414.m06335 DC1 domain-containing protein similar to
hypothetical protein GI:4204272 from [Arabidopsis
thaliana] contains weak PHD zinc finger motifs contains
weak PHD zinc finger motifs DC1 domain, a divergent
protein kinase C domain of unknown function.
Length = 684
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -1
Query: 261 DGGHVTFKTDNLTDEFIVTDTDQLVHSRSGHFFGSDDGSRYGED 130
DGGH + + D+ IV D D + R G G DG +D
Sbjct: 124 DGGHDDEDNNFVDDDVIVNDGDGVGEDRDGDSDGDGDGGDDDDD 167
>At1g17970.1 68414.m02223 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 368
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 409 QSIYIPKGINVPSLAREVDWEFNPLNVKVGSHI 507
+S+ P+G N+PS R++D + N N +GS +
Sbjct: 163 RSVDPPRGRNIPSSRRKIDVDNNNYNHTLGSSV 195
>At3g01040.1 68416.m00005 glycosyl transferase family 8 protein
contains Pfam profile: PF01501 glycosyl transferase
family 8
Length = 533
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +1
Query: 337 LGPGILGSIFDGIQRPLKDINELTQSI---YIPKGINVP 444
LGP +LG I D QR ++D ++ + IP G+ +P
Sbjct: 77 LGPRLLGRIDDSEQRLVRDFYKILNEVSTQEIPDGLKLP 115
>At2g41820.1 68415.m05168 leucine-rich repeat transmembrane protein
kinase, putative
Length = 890
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 196 VRVGYNELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGK 321
+R+G NELVG I R G+++ + +E G+ V K
Sbjct: 259 IRIGNNELVGVIPRTIGNISGLTYFEADKNNLSGEIVAEFSK 300
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,230,870
Number of Sequences: 28952
Number of extensions: 302837
Number of successful extensions: 903
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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