Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_C04
         (618 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9HRV9 Cluster: DNA polymerase; n=1; Halobacterium sali...    36   0.77 
UniRef50_UPI0000F21381 Cluster: PREDICTED: hypothetical protein;...    33   5.5  
UniRef50_UPI0000D8BEB5 Cluster: UPI0000D8BEB5 related cluster; n...    33   5.5  
UniRef50_Q4KB31 Cluster: Putative uncharacterized protein; n=1; ...    33   5.5  
UniRef50_Q6YVW9 Cluster: Putative uncharacterized protein OSJNBb...    33   7.2  
UniRef50_Q97MX8 Cluster: Phage-related protein; n=1; Clostridium...    32   9.5  

>UniRef50_Q9HRV9 Cluster: DNA polymerase; n=1; Halobacterium
           salinarum|Rep: DNA polymerase - Halobacterium salinarium
           (Halobacterium halobium)
          Length = 901

 Score = 35.9 bits (79), Expect = 0.77
 Identities = 19/46 (41%), Positives = 24/46 (52%)
 Frame = -3

Query: 607 VPIPPAEADDGLVY*QHDE*VALEDHADLAIFLFTLHRLDGDGSEE 470
           V +P   ADDG +Y  HDE  A E  ADL +  F +   D +G  E
Sbjct: 175 VRVPARRADDGALYVHHDEIAACEVAADLRVNTFDIEVNDRNGFPE 220


>UniRef50_UPI0000F21381 Cluster: PREDICTED: hypothetical protein;
           n=4; Danio rerio|Rep: PREDICTED: hypothetical protein -
           Danio rerio
          Length = 742

 Score = 33.1 bits (72), Expect = 5.5
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = -1

Query: 594 PQRQTMVLFTDSTMSELRSRTTPTSQFSSLHFIASTAMGAKSIEKR 457
           P++       DSTM +L S TTPT   SS     ST   +KS + R
Sbjct: 325 PEKSIAQTLADSTMKKLESPTTPTRSSSSTRKNPSTPKRSKSCKSR 370


>UniRef50_UPI0000D8BEB5 Cluster: UPI0000D8BEB5 related cluster; n=1;
           Danio rerio|Rep: UPI0000D8BEB5 UniRef100 entry - Danio
           rerio
          Length = 641

 Score = 33.1 bits (72), Expect = 5.5
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = -1

Query: 594 PQRQTMVLFTDSTMSELRSRTTPTSQFSSLHFIASTAMGAKSIEKR 457
           P++       DSTM +L S TTPT   SS     ST   +KS + R
Sbjct: 184 PEKSIAQTLADSTMKKLESPTTPTRSSSSTRKNPSTPKRSKSCKSR 229


>UniRef50_Q4KB31 Cluster: Putative uncharacterized protein; n=1;
           Pseudomonas fluorescens Pf-5|Rep: Putative
           uncharacterized protein - Pseudomonas fluorescens
           (strain Pf-5 / ATCC BAA-477)
          Length = 349

 Score = 33.1 bits (72), Expect = 5.5
 Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +2

Query: 347 QAVK*STPENVVVWRSAPKRA--LSSRCLQSAQKRV*CPRFSMLFAPIAVEAMKCK 508
           Q+++    EN +VW  APKR   L    LQS  KRV     +M  A IA EA + K
Sbjct: 185 QSMQPCETENTLVWEIAPKRTAFLEQAVLQSPSKRVNYAFSAMNAAGIAGEAARLK 240


>UniRef50_Q6YVW9 Cluster: Putative uncharacterized protein
           OSJNBb0038F20.21; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           OSJNBb0038F20.21 - Oryza sativa subsp. japonica (Rice)
          Length = 208

 Score = 32.7 bits (71), Expect = 7.2
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = -2

Query: 593 RRGRRWSCLLTAR*VSCARGPRRPRNFPLYTSSPRRR 483
           RR + W   + A   +CARGPRR    PL   S RRR
Sbjct: 108 RRRQLWRGAVAATATTCARGPRRQLPSPLPPRSGRRR 144


>UniRef50_Q97MX8 Cluster: Phage-related protein; n=1; Clostridium
           acetobutylicum|Rep: Phage-related protein - Clostridium
           acetobutylicum
          Length = 231

 Score = 32.3 bits (70), Expect = 9.5
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -1

Query: 93  INTFTQTLXXIVDFIRISXKR*DCFRDT 10
           IN  T TL  +VD+I I  K  DC++DT
Sbjct: 165 INDNTVTLTNVVDYITIDSKLMDCYKDT 192


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 570,785,857
Number of Sequences: 1657284
Number of extensions: 10905468
Number of successful extensions: 27470
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 26728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27459
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 44807090004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)