Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_C04
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    27   1.6  
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    25   6.6  
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    25   8.8  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    25   8.8  

>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 86  VFIKLVNNDSDKTYRTPPYTAKLPRTCLPHCDNR*RRT 199
           +F +  N+ +  +YR     A LP    PH  NR RR+
Sbjct: 115 LFSQSTNSSNSGSYRNSVTGATLPNAHAPHSQNRRRRS 152


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +1

Query: 331 WPRRRSGSQIVNAGKRGSLAVCAKTRVKLALSSIGSKTCVVSA 459
           W RR  G  I+N GK     V A  RV +A     +  CV+S+
Sbjct: 42  WKRRSDGIHIINLGKTWEKLVLA-ARV-IATIENPADVCVISS 82


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 527 RPRNFPLYTSSPRRRWERRASK 462
           R R  P+  S P R+W+ +A K
Sbjct: 25  RKRTIPVVPSVPERKWDPKAPK 46


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -2

Query: 536 GPRRPRNFPLYTSSPRRRWERRASKSADTTHVFEPIEDSASLTR 405
           GPR    FP  T SP+   ++ ASK A++T + +    SA  +R
Sbjct: 464 GPRSSY-FPKKTVSPKPEAKKEASKVAESTKIPKKQHTSAYESR 506


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,309,546
Number of Sequences: 5004
Number of extensions: 42858
Number of successful extensions: 82
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)