Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_C04
         (618 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0802 - 28155281-28155725,28155750-28156081,28156164-281562...    30   1.3  
05_03_0370 + 13144612-13144639,13144749-13145260,13146995-131473...    30   1.7  
08_02_0416 + 16902153-16902430,16903089-16903143,16903174-169032...    29   2.2  
06_01_0230 + 1765913-1766251,1766365-1766445,1766553-1766651,176...    29   2.2  
02_02_0284 - 8547126-8547187,8547306-8547395,8547810-8547861,854...    29   3.0  
10_02_0102 + 5314875-5315231                                           29   3.9  
07_01_0784 + 6083477-6083653,6086052-6086238,6086672-6086844,608...    28   5.2  

>04_04_0802 -
           28155281-28155725,28155750-28156081,28156164-28156266,
           28156347-28156528,28156617-28156800,28156872-28156960,
           28157634-28157710,28157837-28157927,28158230-28158430
          Length = 567

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
 Frame = +2

Query: 92  IKLVNNDSDKTYRTP-PYTAKLPRTCLPHC-DNR*RRTWK*MQIVVSQLINEDFRIAGSG 265
           +K++    D+  +TP PY  ++PR C   C +NR         +V  QL   D+R++   
Sbjct: 172 VKIIRQVPDRNGKTPYPYKMRIPRKCTAKCYENRVLPALLKKHVV--QLTKFDYRVSNRL 229

Query: 266 PHNI-AIR*RVSSVATQ 313
             N+  +R RV+  A Q
Sbjct: 230 ETNLQKLRCRVNYHALQ 246


>05_03_0370 +
           13144612-13144639,13144749-13145260,13146995-13147327,
           13147690-13147699,13149704-13149816,13151187-13151258,
           13151397-13151432,13151552-13151597,13151726-13151828,
           13151916-13151973,13152231-13152281
          Length = 453

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = +1

Query: 376 RGSLAVCAKTRVKLALSSIGSKTCVVSALFDALRSHRRRGDEV 504
           RGS+A   +TR + + SS G +  +  ++ D LR+ RRRG  +
Sbjct: 100 RGSVAARRRTRRRRSGSSRGLRRILDDSVGDRLRASRRRGSVI 142


>08_02_0416 +
           16902153-16902430,16903089-16903143,16903174-16903232,
           16903565-16903655
          Length = 160

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 217 NLHSLPCSPLSIITMRQTSPRQLSSIRRGTIRFITVIVN 101
           NLH++  +P ++ T  QT      S+R G   ++T+I N
Sbjct: 77  NLHAMVATPHTVETQHQTCGAVKQSLRTGCNYYVTIIWN 115


>06_01_0230 +
           1765913-1766251,1766365-1766445,1766553-1766651,
           1766748-1766837,1766937-1767000,1767093-1767193,
           1767284-1767393,1767515-1767758,1767852-1768052,
           1768296-1768487,1768594-1768680,1768790-1768918,
           1769276-1769392
          Length = 617

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = -3

Query: 190 LSIITMRQTSPRQLSSIRRGTIRFITVIV 104
           LS+ T  + +P+Q  S++RG+ RF +V+V
Sbjct: 48  LSVTTSARATPKQQRSVQRGSRRFPSVVV 76


>02_02_0284 -
           8547126-8547187,8547306-8547395,8547810-8547861,
           8548209-8548284,8550513-8550632,8553334-8553423,
           8553842-8554024,8554125-8554185,8554437-8554477,
           8554563-8554727,8555699-8555776,8556137-8556282
          Length = 387

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = -2

Query: 602 YPSRRGRRWSCLLTAR*VSCARGPR---RPRNFPLYTSSPRRRWERRASKSADTTH 444
           Y    GRR S    +R  S +R PR   RPR+   Y+ +PRRR +  AS     TH
Sbjct: 132 YSDHEGRRSSHYGRSRSRSRSRSPRYRGRPRSRS-YSPAPRRRDDYSASPQRKDTH 186


>10_02_0102 + 5314875-5315231
          Length = 118

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -2

Query: 539 RGPRRPRNFPLYTSSPRRRWERRASKSADTTHVFEPIEDSA 417
           R PR P +    T   RRRW R  SK+A  T     +E +A
Sbjct: 31  RPPRSPHSATTVTRGGRRRWRR--SKTATATSTAAEVEAAA 69


>07_01_0784 +
           6083477-6083653,6086052-6086238,6086672-6086844,
           6087520-6087678,6088677-6088817,6088880-6088941,
           6089120-6089255,6091142-6091236,6091333-6091448,
           6091538-6091667,6091757-6091811,6091889-6091930,
           6092534-6092656
          Length = 531

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 300 QSPPNAARGVVASAPLRQSNSQRRK 374
           Q PP AA  VVA++P+R  N    K
Sbjct: 41  QPPPRAAADVVAASPVRSQNEDLNK 65


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,943,331
Number of Sequences: 37544
Number of extensions: 327412
Number of successful extensions: 1011
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)