Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_C04
         (618 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81586-11|CAF31485.1| 1165|Caenorhabditis elegans Hypothetical p...    29   2.0  
Z93383-6|CAB07623.1|  283|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z81586-11|CAF31485.1| 1165|Caenorhabditis elegans Hypothetical
           protein T05F1.6 protein.
          Length = 1165

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +2

Query: 293 VSSVATQRCARRGGLGAAQAVK*STPENVVVWRSAPKRALSSR 421
           VSS  +    RRGG G    V     +  +V  S P+R  SSR
Sbjct: 308 VSSTPSSNTPRRGGRGQKSEVNADETKTPIVSNSTPRRGRSSR 350


>Z93383-6|CAB07623.1|  283|Caenorhabditis elegans Hypothetical
           protein F54B8.6 protein.
          Length = 283

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/40 (22%), Positives = 17/40 (42%)
 Frame = +2

Query: 479 PIAVEAMKCKEENCEVGVVLERNSLIVLSVNKTIVCLCGR 598
           P+  +  KC   +C     L +  ++  S+    +C C R
Sbjct: 154 PLNCDVFKCTVNSCYYNYYLTQEQIVHFSIGTMTICFCTR 193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,035,243
Number of Sequences: 27780
Number of extensions: 253067
Number of successful extensions: 521
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)