Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_C04
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    28   0.084
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.59 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.59 
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    22   5.5  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              21   7.3  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   7.3  

>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 27.9 bits (59), Expect = 0.084
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
 Frame = -2

Query: 488 RRWERRASKSADTTHVFE---PIEDSASLTRVLAQTARLPRFPALTI*LPERR-RGHHAS 321
           RRW+RR ++ A T   +E    +E+    TR L+   RL    AL++ L E + +    +
Sbjct: 1   RRWDRREARRARTAFTYEQLVALENKFKTTRYLSVCERLNL--ALSLSLTETQVKIWFQN 58

Query: 320 RSVGWRLNSP 291
           R   W+  +P
Sbjct: 59  RRTKWKKQNP 68


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +2

Query: 383 VWRSAPKRALSSRCLQSAQKRV*CPRFSMLFAPIAVEAMKCKEENCEVGVVLERNSLIVL 562
           V RS P  +  SRC     K   C RF      +  ++ K KE+   V +VL+R  L + 
Sbjct: 468 VLRSPPAFS-HSRCPPEIHKSCICVRFIAEHTKMLEDSTKVKEDWKYVAMVLDRLFLWIF 526

Query: 563 SV 568
           ++
Sbjct: 527 TL 528


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +2

Query: 383 VWRSAPKRALSSRCLQSAQKRV*CPRFSMLFAPIAVEAMKCKEENCEVGVVLERNSLIVL 562
           V RS P  +  SRC     K   C RF      +  ++ K KE+   V +VL+R  L + 
Sbjct: 468 VLRSPPAFS-HSRCPPEIHKSCICVRFIAEHTKMLEDSTKVKEDWKYVAMVLDRLFLWIF 526

Query: 563 SV 568
           ++
Sbjct: 527 TL 528


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 195 EHGSECKLSCLS*LMRTF 248
           +H  +C  +C+  L+RTF
Sbjct: 62  DHDLQCYTTCIMKLLRTF 79


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 226 RHDNLHSLPCSPLSIITMRQTSPRQ 152
           RH+      C  L  +TM +T+PR+
Sbjct: 5   RHNGRDFEYCPDLDNVTMPETTPRR 29


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +1

Query: 565 SKQDHRLPLRE 597
           SK DH+LPL++
Sbjct: 136 SKMDHQLPLKQ 146


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,794
Number of Sequences: 438
Number of extensions: 3176
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)