Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_C03
         (407 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    25   4.5  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    25   6.0  
SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomy...    24   7.9  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    24   7.9  

>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +2

Query: 74   GVQRFCLQL--KKTDSNPXLERTAEDFYYLCI 163
            G+ R CL +  + T+S   +  TAED   LCI
Sbjct: 970  GMWRECLSILQQTTNSEDLIRETAEDLASLCI 1001


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 146 NLLLFVPXKDCCLFFLIANKIFVRRSNDFNAVFL 45
           +++L V     CLF  ++N  F +R  D  AVF+
Sbjct: 528 SIILGVIHMTFCLFLSLSNYRFFKRKLDIYAVFV 561


>SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 482

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 259 YLYIFLINHCE*NEVDNVVFLLLSIKNVYP 348
           +L +F  +H +  E+D +V  L    NVYP
Sbjct: 205 FLALFEGDHAKVEELDKLVAKLSGFDNVYP 234


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 98  LKKTDSNPXLERTAEDFYY 154
           +KK D+N  +ERT+ D  Y
Sbjct: 372 IKKVDANTAIERTSPDVEY 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,336,696
Number of Sequences: 5004
Number of extensions: 23622
Number of successful extensions: 66
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)