Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_C03
         (407 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_04_0124 + 16359695-16359734,16360217-16360453,16361133-163621...    30   0.81 
03_05_0001 - 19386264-19386284,19386446-19386517,19386614-193873...    27   5.7  

>01_04_0124 + 16359695-16359734,16360217-16360453,16361133-16362104,
            16362211-16362398,16362564-16363942,16364024-16365047,
            16365171-16365566,16367484-16367999,16368085-16368226,
            16369409-16369553,16371351-16371432,16371851-16371895,
            16372018-16372140
          Length = 1762

 Score = 29.9 bits (64), Expect = 0.81
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 151  LFMYSLSIINGYSV*CIVYMLTVIIIIYINSCSFVYYLYIFLINHC 288
            LF+Y+L +  G S     Y+  VI++IY        Y+Y  +I HC
Sbjct: 949  LFLYALCVNYGPS-----YLFWVIVLIYTELNILSQYIYQIVIQHC 989


>03_05_0001 -
           19386264-19386284,19386446-19386517,19386614-19387357,
           19387454-19388884,19388953-19389118,19392035-19392114,
           19392393-19392462,19392550-19392761,19392837-19392890,
           19393471-19393623,19393715-19393930,19394029-19394248,
           19394332-19394399,19394510-19394643,19394755-19394854,
           19394943-19395421,19395506-19395699,19396270-19396355,
           19396364-19396444,19396842-19397023,19397305-19397346,
           19398247-19398558,19399374-19399434,19399435-19399617,
           19399744-19399863,19400380-19401051,19402597-19402668,
           19402742-19402865,19403563-19403651,19405023-19405097
          Length = 2170

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 205 YMLTVIIIIYINSCSFVYYLYIFLINHCE*NEV-DNVVFLLLSIKN 339
           YML++I +I  N     ++ Y F+  HC   +V    + +L+ +K+
Sbjct: 439 YMLSLIQVILSNHTHLFFFAYWFISVHCVAGQVPTGYISILVRVKS 484


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,155,123
Number of Sequences: 37544
Number of extensions: 110240
Number of successful extensions: 235
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)