Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_C03
         (407 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21796| Best HMM Match : COLFI (HMM E-Value=0)                       27   4.5  
SB_3985| Best HMM Match : C2 (HMM E-Value=0)                           27   4.5  
SB_26064| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  

>SB_21796| Best HMM Match : COLFI (HMM E-Value=0)
          Length = 1239

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
 Frame = -3

Query: 288  TMIYQKNI*IIYKGTAIYVNNN------NDRQHVDYTLDTIAINYTKTIHK 154
            T ++ KN  II +   +  N        ND   +DY LD + + + + +HK
Sbjct: 1104 TCVFPKNTEIITRSLVVNSNGEDTWITENDDVKIDYKLDVVQMKFLRLMHK 1154


>SB_3985| Best HMM Match : C2 (HMM E-Value=0)
          Length = 835

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 71  IGVQRFCLQLKKTDSNPXLERTAEDF 148
           IG Q+F  ++KK D NP    T E F
Sbjct: 396 IGAQKFRTKVKKNDLNPTWNETFEAF 421


>SB_26064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 496

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +1

Query: 148 LLFMYSLSIINGYSV*CIVYMLTVIIIIYINSCSFVYYLYIFLINHCE*NE 300
           ++ + S SII  +    IV ++T+I++I   S S   +   F  N C  NE
Sbjct: 439 IIIISSSSIIKNFYSIAIVILITIIVVIISKSVSDAIF---FTSNGCSINE 486


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,176,010
Number of Sequences: 59808
Number of extensions: 149370
Number of successful extensions: 321
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)