Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_C03
         (407 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28944-9|AAL02438.1|  122|Caenorhabditis elegans Hypothetical pr...    27   6.9  
AF067607-2|AAF98611.1|  109|Caenorhabditis elegans Hypothetical ...    26   9.1  

>U28944-9|AAL02438.1|  122|Caenorhabditis elegans Hypothetical
           protein C18A3.9 protein.
          Length = 122

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 223 IIIYINSCSFVYYLYIFLINHCE*N 297
           III  N   F+YY+++ L+N C  N
Sbjct: 80  IIIVNNFFVFMYYIFLVLVNVCNNN 104


>AF067607-2|AAF98611.1|  109|Caenorhabditis elegans Hypothetical
           protein C18H7.5 protein.
          Length = 109

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 99  NCKQNLCTPIK*FQCCFFVAHQIL*LQNIS 10
           NC+ N    +  F+ CF +A QIL +  +S
Sbjct: 43  NCENNCLQNLAGFKFCFQIAQQILVIYRVS 72


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,344,091
Number of Sequences: 27780
Number of extensions: 132031
Number of successful extensions: 321
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)