Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_C03
         (407 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   1.0  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   1.0  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   1.3  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   1.3  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   7.1  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -3

Query: 294 LFTMIYQ-KNI*IIYKGTAIYVNNN-NDRQHVDYTLDTIAINYTKT 163
           LF + Y  K+  I +K TA++  NN N+ Q++ Y+L T  I    T
Sbjct: 111 LFKLFYHAKDFDIFFK-TALWAKNNINEAQYI-YSLYTAVITRPDT 154


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -3

Query: 294 LFTMIYQ-KNI*IIYKGTAIYVNNN-NDRQHVDYTLDTIAINYTKT 163
           LF + Y  K+  I +K TA++  NN N+ Q++ Y+L T  I    T
Sbjct: 111 LFKLFYHAKDFDIFFK-TALWAKNNINEAQYI-YSLYTAVITRPDT 154


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = -3

Query: 297 ILFTMIYQKNI*IIYKGTAIYVNNNNDRQHVDYTLDTIAINYTKT 163
           +LF ++Y      ++  TA++   N + Q   Y L    I+   T
Sbjct: 108 VLFRLLYSAKTFDVFYNTAVWARFNVNEQMYLYALSVAVIHRPDT 152


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = -3

Query: 297 ILFTMIYQKNI*IIYKGTAIYVNNNNDRQHVDYTLDTIAINYTKT 163
           +LF ++Y      ++  TA++   N + Q   Y L    I+   T
Sbjct: 108 VLFRLLYSAKTFDVFYNTAVWARFNVNEQMYLYALSVAVIHRPDT 152


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 265 INNIQRNSYL 236
           +NN QRN YL
Sbjct: 367 VNNTQRNEYL 376


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,940
Number of Sequences: 438
Number of extensions: 1787
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)